Definition | Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence. |
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Accession | NC_008010 |
Length | 574,127 |
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The map label for this gene is 94972204
Identifier: 94972204
GI number: 94972204
Start: 290214
End: 291116
Strand: Direct
Name: 94972204
Synonym: Dgeo_2737
Alternate gene names: NA
Gene position: 290214-291116 (Clockwise)
Preceding gene: 94972206
Following gene: 94972202
Centisome position: 50.55
GC content: 69.1
Gene sequence:
>903_bases ATGCCCATGCGGCAGGCGGCCCAGCAGCCTTTATCCTCTGGAGGTATGGTGGAACGTGTTTCCCCGAACCCGCGCCTGCC AGAGCAGTTGCGGCGCGCCCTCACCAGCGGCAACCTGGAGGGCTTCCTCGACTTGATCGCCCAGGGCCTGCCCGGTGCGC CTGGCAACGCGACCCGCAAGAACTACCTCTCCAGTCTGCGCGCCTACCTGCGTTGGACAGATGCCGAGGGGCGGAGCGTG CTGCATGCGCGCGAGGACGACGCGCAGGCCTATCTGGCCTTCCTGCTGGCTAAGCACGCCCATGCTCCGGCCACCATCCA CAACCACCTCACCCGCGTGCGGACCCTCTACGACCTGCTGCACGAGTACGGCGCCCACGCTGGCCCCAACCCCTTTTTGG GCCTCAAGCTTCCCAGCAACAAACCCGAGGAACACCGCGACCTCTACAGCGAGGAGGAGGTTCGGCGACTGGTGACCCAC GCCGACGCGCAGGGCCGCGCCGTGGTGCTGCTGGGCGCGCACGCGGGCCTCACCGGTCCCGAAACTGTGGGGCTGCGCTG GGAGGACGTGGACACCCGCGCAGGACTGCTGAGGGTCCGCGGGCGGCAGGTGGAGGCCAGCGACGAGCTGCACGCGGCGC TGCGCGCCTACGGGCAGGAACGCGGGCACACCGACCTGTTTGCGGCGCGCGGGCCGATCTTCGACTTCCAGACCGACCAC GAGCTGCGTGCCGCCATCTATCGCCTCTGTCAGCAGGCCAACGTGACGTACAAGGCGTGGCGGGCACTGCGCAACACGGC GGGCCTGCGCCTCCTGAACCTCACCGGCGACCCGCAGGTGGTGGCCGACCGACTGGGCCTCACGACGCTGAAGGCGGTGG AGGTGTGGCAAAAGCTGCAGTAG
Upstream 100 bases:
>100_bases GGTTAAAACCCGGAGCATTCCGCCCAGACCCATCTCTGTAAGTTCGCCCGTGTAGCCCCGGGACTCACTCTCAGCAAGAC GTGGCCATGGCGAGGCTGGC
Downstream 100 bases:
>100_bases CTGCCGTCAAGGCGCAGCACAGAGGCCATAGGCTGCTGATCCCAACGGGCGTTGATTTCTGTCCTGAGCTTCTGGCATCA GCACCACCCCGTATGAACCT
Product: phage integrase-like SAM-like
Products: NA
Alternate protein names: Integrase/Recombinase
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MPMRQAAQQPLSSGGMVERVSPNPRLPEQLRRALTSGNLEGFLDLIAQGLPGAPGNATRKNYLSSLRAYLRWTDAEGRSV LHAREDDAQAYLAFLLAKHAHAPATIHNHLTRVRTLYDLLHEYGAHAGPNPFLGLKLPSNKPEEHRDLYSEEEVRRLVTH ADAQGRAVVLLGAHAGLTGPETVGLRWEDVDTRAGLLRVRGRQVEASDELHAALRAYGQERGHTDLFAARGPIFDFQTDH ELRAAIYRLCQQANVTYKAWRALRNTAGLRLLNLTGDPQVVADRLGLTTLKAVEVWQKLQ
Sequences:
>Translated_300_residues MPMRQAAQQPLSSGGMVERVSPNPRLPEQLRRALTSGNLEGFLDLIAQGLPGAPGNATRKNYLSSLRAYLRWTDAEGRSV LHAREDDAQAYLAFLLAKHAHAPATIHNHLTRVRTLYDLLHEYGAHAGPNPFLGLKLPSNKPEEHRDLYSEEEVRRLVTH ADAQGRAVVLLGAHAGLTGPETVGLRWEDVDTRAGLLRVRGRQVEASDELHAALRAYGQERGHTDLFAARGPIFDFQTDH ELRAAIYRLCQQANVTYKAWRALRNTAGLRLLNLTGDPQVVADRLGLTTLKAVEVWQKLQ >Mature_299_residues PMRQAAQQPLSSGGMVERVSPNPRLPEQLRRALTSGNLEGFLDLIAQGLPGAPGNATRKNYLSSLRAYLRWTDAEGRSVL HAREDDAQAYLAFLLAKHAHAPATIHNHLTRVRTLYDLLHEYGAHAGPNPFLGLKLPSNKPEEHRDLYSEEEVRRLVTHA DAQGRAVVLLGAHAGLTGPETVGLRWEDVDTRAGLLRVRGRQVEASDELHAALRAYGQERGHTDLFAARGPIFDFQTDHE LRAAIYRLCQQANVTYKAWRALRNTAGLRLLNLTGDPQVVADRLGLTTLKAVEVWQKLQ
Specific function: Unknown
COG id: COG0582
COG function: function code L; Integrase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33324; Mature: 33193
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMRQAAQQPLSSGGMVERVSPNPRLPEQLRRALTSGNLEGFLDLIAQGLPGAPGNATRK CCHHHHHHCHHHCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHH NYLSSLRAYLRWTDAEGRSVLHAREDDAQAYLAFLLAKHAHAPATIHNHLTRVRTLYDLL HHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH HEYGAHAGPNPFLGLKLPSNKPEEHRDLYSEEEVRRLVTHADAQGRAVVLLGAHAGLTGP HHHCCCCCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC ETVGLRWEDVDTRAGLLRVRGRQVEASDELHAALRAYGQERGHTDLFAARGPIFDFQTDH CCCCCEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCH ELRAAIYRLCQQANVTYKAWRALRNTAGLRLLNLTGDPQVVADRLGLTTLKAVEVWQKLQ HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCHHHHHHHHHHHHCC >Mature Secondary Structure PMRQAAQQPLSSGGMVERVSPNPRLPEQLRRALTSGNLEGFLDLIAQGLPGAPGNATRK CHHHHHHCHHHCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHH NYLSSLRAYLRWTDAEGRSVLHAREDDAQAYLAFLLAKHAHAPATIHNHLTRVRTLYDLL HHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH HEYGAHAGPNPFLGLKLPSNKPEEHRDLYSEEEVRRLVTHADAQGRAVVLLGAHAGLTGP HHHCCCCCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC ETVGLRWEDVDTRAGLLRVRGRQVEASDELHAALRAYGQERGHTDLFAARGPIFDFQTDH CCCCCEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCH ELRAAIYRLCQQANVTYKAWRALRNTAGLRLLNLTGDPQVVADRLGLTTLKAVEVWQKLQ HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA