Click here to switch to the map view.

The map label for this gene is ydfG [H]

Identifier: 94313242

GI number: 94313242

Start: 911840

End: 912277

Strand: Reverse

Name: ydfG [H]

Synonym: Rmet_4317

Alternate gene names: 94313242

Gene position: 912277-911840 (Counterclockwise)

Preceding gene: 94313243

Following gene: 94313241

Centisome position: 35.36

GC content: 60.27

Gene sequence:

>438_bases
ATGACCCAACGTCTCGATTTCTACAATGCCAACCCGAACGCCATCAAGGCGCTGCTTGGGCTGGAAAAGCGCATCAGCGA
ATCCAGCCTCGAGAAGTCCCTGGTGGAACTGATTCGGCTCCGCGCCTCCCTGATCAACGGCTGCGCCTACTGCATCGACC
TTCATACCGCGGACGCGCGCAAGGGAGGAGAAGACGATCGCCGCCTTGCCACGCTGTCCGTCTGGCGCGAAACACCCTTC
TTCACAGATCGCGAACGCGCGGCGCTGGCCTGGACCGAAGCCGTCACGCTCGTATCTCAGAATCATGTGCCAGATGAAGT
CTGGACCGCCGTGCGGCCGCACTTCGACGACGCTGAACTCGTGGACCTGACGCTTCTGATCTCGACCATCAATACGTGGA
ACCGCTTCGCGATTTCGTTCCGCAAGACACCAGCGTGA

Upstream 100 bases:

>100_bases
ATAGCCATAAATCGGTACTAAAAGGTCACCACTTCATTGCCTAAGCTTGCGTCTGAGGCGTGCCAGCCGGCACGCATATG
AACAAGCCAAGGAAAAAGTC

Downstream 100 bases:

>100_bases
GGTCCGCCATGACAGCGCTCGCCATACGTCGCAATGTGCTTCAGGTGCCCCTGATTGCTGCCATGCTGCTCTGCACCATG
GCAGCCACCAGGCCGGCACT

Product: alkylhydroperoxidase AhpD core

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MTQRLDFYNANPNAIKALLGLEKRISESSLEKSLVELIRLRASLINGCAYCIDLHTADARKGGEDDRRLATLSVWRETPF
FTDRERAALAWTEAVTLVSQNHVPDEVWTAVRPHFDDAELVDLTLLISTINTWNRFAISFRKTPA

Sequences:

>Translated_145_residues
MTQRLDFYNANPNAIKALLGLEKRISESSLEKSLVELIRLRASLINGCAYCIDLHTADARKGGEDDRRLATLSVWRETPF
FTDRERAALAWTEAVTLVSQNHVPDEVWTAVRPHFDDAELVDLTLLISTINTWNRFAISFRKTPA
>Mature_144_residues
TQRLDFYNANPNAIKALLGLEKRISESSLEKSLVELIRLRASLINGCAYCIDLHTADARKGGEDDRRLATLSVWRETPFF
TDRERAALAWTEAVTLVSQNHVPDEVWTAVRPHFDDAELVDLTLLISTINTWNRFAISFRKTPA

Specific function: Unknown

COG id: COG2128

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004675
- InterPro:   IPR003779 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: NA

Molecular weight: Translated: 16473; Mature: 16342

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQRLDFYNANPNAIKALLGLEKRISESSLEKSLVELIRLRASLINGCAYCIDLHTADAR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
KGGEDDRRLATLSVWRETPFFTDRERAALAWTEAVTLVSQNHVPDEVWTAVRPHFDDAEL
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHH
VDLTLLISTINTWNRFAISFRKTPA
HHHHHHHHHHCCCHHEEEEEECCCC
>Mature Secondary Structure 
TQRLDFYNANPNAIKALLGLEKRISESSLEKSLVELIRLRASLINGCAYCIDLHTADAR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCC
KGGEDDRRLATLSVWRETPFFTDRERAALAWTEAVTLVSQNHVPDEVWTAVRPHFDDAEL
CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHH
VDLTLLISTINTWNRFAISFRKTPA
HHHHHHHHHHCCCHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]