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The map label for this gene is flgD [H]

Identifier: 94312668

GI number: 94312668

Start: 278467

End: 279135

Strand: Direct

Name: flgD [H]

Synonym: Rmet_3736

Alternate gene names: 94312668

Gene position: 278467-279135 (Clockwise)

Preceding gene: 94312667

Following gene: 94312669

Centisome position: 10.79

GC content: 64.57

Gene sequence:

>669_bases
ATGACCACCACTTCCAACGTTGGCAGCAGCACTACTTCGGCCGTGAACCAGGCGCTGCAGAACGGCAGCGCCAGCGCCGC
CGATCTGCAGAACCAGTTCCTGACGATGCTGGTGACGCAGATGAACAACCAGGACCCGCTCAATCCGCTGGACAACTCGC
AGCTCACCTCGCAGCTCGCGCAGATCAGCACCGTCAGCGGCCTGCAGACGATGAACACCACGATGACTCAGCTGCTGCAG
CAGACCGCTGCCAGCCGTGCGATGGACTCCGCCAACCTGATCGGCAAGACCGTGATGGTGCCGGGCTCTGCCGTGAGCGT
GTCCGGCGGCGTGCCGGGCCAGATTGGCGTGGACATTCCTTCGACCGCCGACAGCGTGACCGTGCAGGTGCTTGACGCCA
GCGGCAACGTGGTGCGCACGATCGACATGAAGGGCCAGACCGCTGGCGTGAAGGATGTTGCCTGGGACGGCAAGAACGAC
CAGGGCAACGCGGTCGCGGATGGCGACTACAGCTTCAAGGTGGCCGCGACAGCCAATGGCAAGGACGTGAAGCCGGTGGC
GCTGGTCTACGGCAAGGTGCAAGCGATCAGCGGCGACAGTTCGGGCGTGCTGGTCGACCTCGGCAACGGCCAGACTGCCA
GCGTCGACGACGTACGCCGCATTTCCTGA

Upstream 100 bases:

>100_bases
TCGAGGTGCTCAACACCGCCAAGAACATGATGCTGAAGACGCTGACCATCGGTCAGTGAAGCCCAACCTTCCGAATCTCC
AGGACTAGCCGGAACCCACC

Downstream 100 bases:

>100_bases
ACGCATTCACATATCACCCGGTCCGGCATACGCGCGGGCATTTCACGAACGACAGCCTACATAGGGGTTAATCATGGGTT
TTGGTCAAGGGGTAAGCGGC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTTTSNVGSSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGLQTMNTTMTQLLQ
QTAASRAMDSANLIGKTVMVPGSAVSVSGGVPGQIGVDIPSTADSVTVQVLDASGNVVRTIDMKGQTAGVKDVAWDGKND
QGNAVADGDYSFKVAATANGKDVKPVALVYGKVQAISGDSSGVLVDLGNGQTASVDDVRRIS

Sequences:

>Translated_222_residues
MTTTSNVGSSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGLQTMNTTMTQLLQ
QTAASRAMDSANLIGKTVMVPGSAVSVSGGVPGQIGVDIPSTADSVTVQVLDASGNVVRTIDMKGQTAGVKDVAWDGKND
QGNAVADGDYSFKVAATANGKDVKPVALVYGKVQAISGDSSGVLVDLGNGQTASVDDVRRIS
>Mature_221_residues
TTTSNVGSSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLAQISTVSGLQTMNTTMTQLLQQ
TAASRAMDSANLIGKTVMVPGSAVSVSGGVPGQIGVDIPSTADSVTVQVLDASGNVVRTIDMKGQTAGVKDVAWDGKNDQ
GNAVADGDYSFKVAATANGKDVKPVALVYGKVQAISGDSSGVLVDLGNGQTASVDDVRRIS

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=203, Percent_Identity=42.8571428571429, Blast_Score=152, Evalue=1e-38,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 22650; Mature: 22519

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTSNVGSSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLA
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
QISTVSGLQTMNTTMTQLLQQTAASRAMDSANLIGKTVMVPGSAVSVSGGVPGQIGVDIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCCEECCCCC
STADSVTVQVLDASGNVVRTIDMKGQTAGVKDVAWDGKNDQGNAVADGDYSFKVAATANG
CCCCEEEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEECCCCEEEEEEECCC
KDVKPVALVYGKVQAISGDSSGVLVDLGNGQTASVDDVRRIS
CCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCC
>Mature Secondary Structure 
TTTSNVGSSTTSAVNQALQNGSASAADLQNQFLTMLVTQMNNQDPLNPLDNSQLTSQLA
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
QISTVSGLQTMNTTMTQLLQQTAASRAMDSANLIGKTVMVPGSAVSVSGGVPGQIGVDIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCCCEECCCCC
STADSVTVQVLDASGNVVRTIDMKGQTAGVKDVAWDGKNDQGNAVADGDYSFKVAATANG
CCCCEEEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEECCCCEEEEEEECCC
KDVKPVALVYGKVQAISGDSSGVLVDLGNGQTASVDDVRRIS
CCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]