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The map label for this gene is yngJ [H]

Identifier: 94312660

GI number: 94312660

Start: 270493

End: 271638

Strand: Direct

Name: yngJ [H]

Synonym: Rmet_3728

Alternate gene names: 94312660

Gene position: 270493-271638 (Clockwise)

Preceding gene: 94312659

Following gene: 291481484

Centisome position: 10.48

GC content: 65.88

Gene sequence:

>1146_bases
ATGCATTTCAAGCTGAATGATGCGCAGCAAATGCTGCAGGACAGCGCCCGCCGCTTCGTCGAGAAGGCATATGCATTCGA
AGCCCGCACCGCGTTGATCCAGGCGGGCCAGACTGGCGGTACCCGTCACTGGCAGACCTTTGCCGAGAACGGCTGGCTTG
CCGCCGCGCTGCCGGAGACTTGCGGCGGCCTGGGCGGTTCGGTGATCGACACCGCCCTGATCGCGCAGGAACTCGGGCGT
GGCCTGGTGCTGGAGCCATTTCTGGGTAGCGGCGTGCTGGCCACGCAGACGCTGCTGGCCGCAGCCACGCCGAGCCAGAG
AGAGGCACTGCTGCCATCACTGGCCGAAGGGACACGACGTTACGCGCTTGCGTACAGCGAGGCCGATGCGCGTGGAATGC
CGGAGATCCTTTCGACGTCTGCCGAGGCTGGCACGGACGGCTACACGTTGCGTGGCACCAAGACGCTGGTGCTGGGCGGT
GTGGACGCCGATGCCTTCATCGTGTCGGCGCGCCTTGCCGATAGTGGGGAGCCGTCTGCGATCACGCTCTTTCTCGTCGA
CGCCGGCACGCCGGGTCTGACGTGCCACGCGCTGCCACTACATGACGGCACATGGGCGGCGGAGCTGGAGATCGATGGGG
CGCGCGTGCCGGCTTCGGCCATGCTCGGCCAGCCGGGCGAAGGTTTGCGGGCATTGCGCCACGGGTTGGCGCATGCGACG
GCGGCGCTGTGCGCGGAGCTTGTCGGCGGCATGGAGAAAGCCGTCGAGGTCACGGCGGATTACCTCAAGGTGCGCAAGCA
GTTCGGCGTGCCCATCGGCAGCTTCCAGGCGCTGCAACACCGCATGTCCGACATGGCCGCGGAGATGGAGCTGGCGCGTT
CCATGCTGTTCTCGCTACTGGCAGCCATCGACCATGAGGACGAAGCCACGCTGTTGCATCGGGTTTCCCAGGCCAAGGCG
TTTGTCGGCCGTGCTGCCCGGTATGTCTGCGGGCAGGCCATTCAGTTGCACGGTGGCATCGGCATGACCGACGAGTACTT
GATCGGCCACTACTACAAGCGCGCCATTGTTGCGGATTTGATCTTCGGCTCGGCGGATCGGCACGAGGCAATCTGCGCCG
AGGCCATTCAGGCGGCGATGGCGTGA

Upstream 100 bases:

>100_bases
GGCGGGCCACCACGATCTACGGTGGTACCAGCGAAGTGCAGCGCGGCATCATCGCCAAGTCGCTGTTTCAGTTCTGACCC
GACACGAGTGTTCCATATCC

Downstream 100 bases:

>100_bases
TCGCGAGATGGGGACCGATGGCGCGTTAGCCCGCCCCTAAGTCGGCAAAGCATCAAAGAAAAAGCCCCGGAGCATTCCTG
CTCCGGGGCTTTTCTGTTTT

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MHFKLNDAQQMLQDSARRFVEKAYAFEARTALIQAGQTGGTRHWQTFAENGWLAAALPETCGGLGGSVIDTALIAQELGR
GLVLEPFLGSGVLATQTLLAAATPSQREALLPSLAEGTRRYALAYSEADARGMPEILSTSAEAGTDGYTLRGTKTLVLGG
VDADAFIVSARLADSGEPSAITLFLVDAGTPGLTCHALPLHDGTWAAELEIDGARVPASAMLGQPGEGLRALRHGLAHAT
AALCAELVGGMEKAVEVTADYLKVRKQFGVPIGSFQALQHRMSDMAAEMELARSMLFSLLAAIDHEDEATLLHRVSQAKA
FVGRAARYVCGQAIQLHGGIGMTDEYLIGHYYKRAIVADLIFGSADRHEAICAEAIQAAMA

Sequences:

>Translated_381_residues
MHFKLNDAQQMLQDSARRFVEKAYAFEARTALIQAGQTGGTRHWQTFAENGWLAAALPETCGGLGGSVIDTALIAQELGR
GLVLEPFLGSGVLATQTLLAAATPSQREALLPSLAEGTRRYALAYSEADARGMPEILSTSAEAGTDGYTLRGTKTLVLGG
VDADAFIVSARLADSGEPSAITLFLVDAGTPGLTCHALPLHDGTWAAELEIDGARVPASAMLGQPGEGLRALRHGLAHAT
AALCAELVGGMEKAVEVTADYLKVRKQFGVPIGSFQALQHRMSDMAAEMELARSMLFSLLAAIDHEDEATLLHRVSQAKA
FVGRAARYVCGQAIQLHGGIGMTDEYLIGHYYKRAIVADLIFGSADRHEAICAEAIQAAMA
>Mature_381_residues
MHFKLNDAQQMLQDSARRFVEKAYAFEARTALIQAGQTGGTRHWQTFAENGWLAAALPETCGGLGGSVIDTALIAQELGR
GLVLEPFLGSGVLATQTLLAAATPSQREALLPSLAEGTRRYALAYSEADARGMPEILSTSAEAGTDGYTLRGTKTLVLGG
VDADAFIVSARLADSGEPSAITLFLVDAGTPGLTCHALPLHDGTWAAELEIDGARVPASAMLGQPGEGLRALRHGLAHAT
AALCAELVGGMEKAVEVTADYLKVRKQFGVPIGSFQALQHRMSDMAAEMELARSMLFSLLAAIDHEDEATLLHRVSQAKA
FVGRAARYVCGQAIQLHGGIGMTDEYLIGHYYKRAIVADLIFGSADRHEAICAEAIQAAMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=383, Percent_Identity=26.3707571801567, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI226958414, Length=343, Percent_Identity=27.4052478134111, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI7656849, Length=310, Percent_Identity=27.741935483871, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI4557233, Length=380, Percent_Identity=26.5789473684211, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI4501859, Length=388, Percent_Identity=26.0309278350515, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4557231, Length=388, Percent_Identity=26.0309278350515, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI187960098, Length=388, Percent_Identity=26.0309278350515, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI76496475, Length=366, Percent_Identity=28.4153005464481, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI4557235, Length=366, Percent_Identity=28.4153005464481, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI4501857, Length=375, Percent_Identity=24.5333333333333, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI4503943, Length=308, Percent_Identity=27.5974025974026, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI21361497, Length=358, Percent_Identity=23.7430167597765, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI7669494, Length=273, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=6e-16,
Organism=Escherichia coli, GI87081958, Length=371, Percent_Identity=26.1455525606469, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786223, Length=378, Percent_Identity=24.3386243386243, Blast_Score=91, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538396, Length=382, Percent_Identity=29.0575916230367, Blast_Score=144, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17534899, Length=380, Percent_Identity=27.3684210526316, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17506239, Length=326, Percent_Identity=26.9938650306748, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17569725, Length=380, Percent_Identity=26.5789473684211, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17508101, Length=327, Percent_Identity=25.9938837920489, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17570075, Length=395, Percent_Identity=25.3164556962025, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71985184, Length=313, Percent_Identity=26.8370607028754, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71990804, Length=258, Percent_Identity=28.2945736434109, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71985192, Length=273, Percent_Identity=26.007326007326, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17533517, Length=312, Percent_Identity=22.1153846153846, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17534353, Length=337, Percent_Identity=25.2225519287834, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32563615, Length=234, Percent_Identity=26.4957264957265, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355753, Length=380, Percent_Identity=29.4736842105263, Blast_Score=132, Evalue=5e-31,
Organism=Drosophila melanogaster, GI21356377, Length=378, Percent_Identity=26.1904761904762, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24666513, Length=343, Percent_Identity=25.3644314868805, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24646207, Length=380, Percent_Identity=25.7894736842105, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24660351, Length=388, Percent_Identity=26.2886597938144, Blast_Score=93, Evalue=4e-19,
Organism=Drosophila melanogaster, GI281363737, Length=366, Percent_Identity=24.5901639344262, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19920834, Length=290, Percent_Identity=25.5172413793103, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40261; Mature: 40261

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHFKLNDAQQMLQDSARRFVEKAYAFEARTALIQAGQTGGTRHWQTFAENGWLAAALPET
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECHHH
CGGLGGSVIDTALIAQELGRGLVLEPFLGSGVLATQTLLAAATPSQREALLPSLAEGTRR
HCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YALAYSEADARGMPEILSTSAEAGTDGYTLRGTKTLVLGGVDADAFIVSARLADSGEPSA
EEEEECCCCCCCCHHHHHCCCCCCCCCEEEECCEEEEEECCCCCHHEEEEECCCCCCCCE
ITLFLVDAGTPGLTCHALPLHDGTWAAELEIDGARVPASAMLGQPGEGLRALRHGLAHAT
EEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHH
AALCAELVGGMEKAVEVTADYLKVRKQFGVPIGSFQALQHRMSDMAAEMELARSMLFSLL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAIDHEDEATLLHRVSQAKAFVGRAARYVCGQAIQLHGGIGMTDEYLIGHYYKRAIVADL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
IFGSADRHEAICAEAIQAAMA
HHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MHFKLNDAQQMLQDSARRFVEKAYAFEARTALIQAGQTGGTRHWQTFAENGWLAAALPET
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECHHH
CGGLGGSVIDTALIAQELGRGLVLEPFLGSGVLATQTLLAAATPSQREALLPSLAEGTRR
HCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YALAYSEADARGMPEILSTSAEAGTDGYTLRGTKTLVLGGVDADAFIVSARLADSGEPSA
EEEEECCCCCCCCHHHHHCCCCCCCCCEEEECCEEEEEECCCCCHHEEEEECCCCCCCCE
ITLFLVDAGTPGLTCHALPLHDGTWAAELEIDGARVPASAMLGQPGEGLRALRHGLAHAT
EEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHH
AALCAELVGGMEKAVEVTADYLKVRKQFGVPIGSFQALQHRMSDMAAEMELARSMLFSLL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAIDHEDEATLLHRVSQAKAFVGRAARYVCGQAIQLHGGIGMTDEYLIGHYYKRAIVADL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
IFGSADRHEAICAEAIQAAMA
HHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]