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The map label for this gene is ydcI [H]

Identifier: 94312639

GI number: 94312639

Start: 248922

End: 250142

Strand: Direct

Name: ydcI [H]

Synonym: Rmet_3707

Alternate gene names: 94312639

Gene position: 248922-250142 (Clockwise)

Preceding gene: 94312635

Following gene: 94312640

Centisome position: 9.65

GC content: 68.63

Gene sequence:

>1221_bases
ATGGAGACCATCAGCCTGCATCACCTTCACGTTTTTGCCGGTGTCGCCGCTGCCGGAGGGGTACGGCGATCCTCTGAGTC
GCTGCATCGGGCGTCGTCTGCGATTGCCCGCTCGGTGGCCGCGCTCGAGGAGACGCTCGGGGTGGTGTTGTTCGAGCGCA
AGGGCAGGGGGATGCTGCTGACACGTGCCGGCGAGATCGTGCTTGAGCGCGCGCGGCATATCGAAGGCGCCTTGCGCGAG
GTGCGGGAGGAAGCGGTACGGATGCGGGCGCAATCGGGCGCCGCCGTCGCTAGTATCGACGCGCTGCACAACGAACGGCG
GCTCGAAGTGGCGGCGATGCTGGCCGAGGTGCATCACATGCCCAGCGTGGCGGCGTCGATCGGCGTGTCGCAGCCGGCGG
TCAGTCAGGCAATCGCCCGGCTGGAGGATGCATTGGGCCAGCCCATCTTCGCGCGCACGGCGCGGGGCATGGTGCCCACC
GACGCAGGCAGCCGCTGGGTGGTTCGCTTCGAGCGCGTGCTGGCAGAACTGCGCAATATCCGCGCCGATATCGCCGCGCT
GAAGGGGGTGCTGGAAGGTGTGGTGACGGTTGGCGCGCTGCCGCTGGGCCGCACGCTGCTGTTGCCGATGGCGATTGCCG
ACGTGCACCGGCGCCATCCGCATCTGCGTTTCCGGACGCTCGAAAGCCCGTATGAGGAACTGACCGCGGGCCTGCTGGCC
GGGCGGATCGATTTCATTCTTGGCGCGGTACGTCCGCTGGCCTCGCAAGGGCTTGCCACCGAGAGGCTTTTCCAGGACCG
GATCTCGCTGATCGTTCGCGCCGCGCATCCGCTGGCGGCCAGAAAGCGCGTGACGCTGGCCGATCTCGAACCGTATCCGT
GGGTGCTGTCTCGCGCCGCATCGCCGTCGCGCCAGGCCCTGGACGGCGTGTTTGCGTCACGTGGCCTGCCGTTGCCACAG
CCGCTGGTTGAAACCGGAGACCTCGCGCTGGTGCGCGGCATGTTGCTGCAGGGGGACATGGTGACCGCCTTGTCCGCCCA
TCAGCTTCGCCACGAGATCGACGCGGGATGGCTGCGCGAACTGGGGCTCCCGCTGCCCGACACGGCGCGCAGCATCGGCA
TCACCACTCGCGTGGGCGCGCGTCTCTCGCCCGGCGCCGATGCGCTGATCGCCGCGCTGCGGCACGCCAGCGGGTCAATG
GAACAGGCCGTCGATAAGTAG

Upstream 100 bases:

>100_bases
GTATCGGCGTACCGTGGAATCCCTTGGTTGCCATGTCGCGGGACAGTTGTTCTAATCTGCTTATCGACAGCACAAATACA
ACATCGGGTCGGACGACGCC

Downstream 100 bases:

>100_bases
ATGGCAACGCAGCCCGCGCCACAAAGCAATACTGCTATCCCCTGCTGAACGTAGACTGCCGTTGCCGTGCATGGGGGATG
CGCGGCCGGCCGCTTCCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
METISLHHLHVFAGVAAAGGVRRSSESLHRASSAIARSVAALEETLGVVLFERKGRGMLLTRAGEIVLERARHIEGALRE
VREEAVRMRAQSGAAVASIDALHNERRLEVAAMLAEVHHMPSVAASIGVSQPAVSQAIARLEDALGQPIFARTARGMVPT
DAGSRWVVRFERVLAELRNIRADIAALKGVLEGVVTVGALPLGRTLLLPMAIADVHRRHPHLRFRTLESPYEELTAGLLA
GRIDFILGAVRPLASQGLATERLFQDRISLIVRAAHPLAARKRVTLADLEPYPWVLSRAASPSRQALDGVFASRGLPLPQ
PLVETGDLALVRGMLLQGDMVTALSAHQLRHEIDAGWLRELGLPLPDTARSIGITTRVGARLSPGADALIAALRHASGSM
EQAVDK

Sequences:

>Translated_406_residues
METISLHHLHVFAGVAAAGGVRRSSESLHRASSAIARSVAALEETLGVVLFERKGRGMLLTRAGEIVLERARHIEGALRE
VREEAVRMRAQSGAAVASIDALHNERRLEVAAMLAEVHHMPSVAASIGVSQPAVSQAIARLEDALGQPIFARTARGMVPT
DAGSRWVVRFERVLAELRNIRADIAALKGVLEGVVTVGALPLGRTLLLPMAIADVHRRHPHLRFRTLESPYEELTAGLLA
GRIDFILGAVRPLASQGLATERLFQDRISLIVRAAHPLAARKRVTLADLEPYPWVLSRAASPSRQALDGVFASRGLPLPQ
PLVETGDLALVRGMLLQGDMVTALSAHQLRHEIDAGWLRELGLPLPDTARSIGITTRVGARLSPGADALIAALRHASGSM
EQAVDK
>Mature_406_residues
METISLHHLHVFAGVAAAGGVRRSSESLHRASSAIARSVAALEETLGVVLFERKGRGMLLTRAGEIVLERARHIEGALRE
VREEAVRMRAQSGAAVASIDALHNERRLEVAAMLAEVHHMPSVAASIGVSQPAVSQAIARLEDALGQPIFARTARGMVPT
DAGSRWVVRFERVLAELRNIRADIAALKGVLEGVVTVGALPLGRTLLLPMAIADVHRRHPHLRFRTLESPYEELTAGLLA
GRIDFILGAVRPLASQGLATERLFQDRISLIVRAAHPLAARKRVTLADLEPYPWVLSRAASPSRQALDGVFASRGLPLPQ
PLVETGDLALVRGMLLQGDMVTALSAHQLRHEIDAGWLRELGLPLPDTARSIGITTRVGARLSPGADALIAALRHASGSM
EQAVDK

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=294, Percent_Identity=29.5918367346939, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=24.9146757679181, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1790399, Length=307, Percent_Identity=28.9902280130293, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI157672245, Length=223, Percent_Identity=29.1479820627803, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=28.9772727272727, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788481, Length=269, Percent_Identity=27.1375464684015, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788748, Length=214, Percent_Identity=29.4392523364486, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789506, Length=227, Percent_Identity=25.5506607929515, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788296, Length=200, Percent_Identity=27.5, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 43616; Mature: 43616

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METISLHHLHVFAGVAAAGGVRRSSESLHRASSAIARSVAALEETLGVVLFERKGRGMLL
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEE
TRAGEIVLERARHIEGALREVREEAVRMRAQSGAAVASIDALHNERRLEVAAMLAEVHHM
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
PSVAASIGVSQPAVSQAIARLEDALGQPIFARTARGMVPTDAGSRWVVRFERVLAELRNI
HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
RADIAALKGVLEGVVTVGALPLGRTLLLPMAIADVHRRHPHLRFRTLESPYEELTAGLLA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
GRIDFILGAVRPLASQGLATERLFQDRISLIVRAAHPLAARKRVTLADLEPYPWVLSRAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEECCCCCHHHHHHCC
SPSRQALDGVFASRGLPLPQPLVETGDLALVRGMLLQGDMVTALSAHQLRHEIDAGWLRE
CCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHH
LGLPLPDTARSIGITTRVGARLSPGADALIAALRHASGSMEQAVDK
CCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHCC
>Mature Secondary Structure
METISLHHLHVFAGVAAAGGVRRSSESLHRASSAIARSVAALEETLGVVLFERKGRGMLL
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEE
TRAGEIVLERARHIEGALREVREEAVRMRAQSGAAVASIDALHNERRLEVAAMLAEVHHM
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHH
PSVAASIGVSQPAVSQAIARLEDALGQPIFARTARGMVPTDAGSRWVVRFERVLAELRNI
HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
RADIAALKGVLEGVVTVGALPLGRTLLLPMAIADVHRRHPHLRFRTLESPYEELTAGLLA
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH
GRIDFILGAVRPLASQGLATERLFQDRISLIVRAAHPLAARKRVTLADLEPYPWVLSRAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCEEECCCCCHHHHHHCC
SPSRQALDGVFASRGLPLPQPLVETGDLALVRGMLLQGDMVTALSAHQLRHEIDAGWLRE
CCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHH
LGLPLPDTARSIGITTRVGARLSPGADALIAALRHASGSMEQAVDK
CCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]