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The map label for this gene is yciR [C]

Identifier: 94312611

GI number: 94312611

Start: 217347

End: 219329

Strand: Direct

Name: yciR [C]

Synonym: Rmet_3679

Alternate gene names: 94312611

Gene position: 217347-219329 (Clockwise)

Preceding gene: 94312610

Following gene: 94312612

Centisome position: 8.42

GC content: 68.13

Gene sequence:

>1983_bases
ATGATCGCCACGAGTTCCAGCCTCCTGCTGCTCGCAGCCCTGCTCGGCATTGCCGCGGCAGTGGGCGTGCGCGCGGCCAA
AACCGAAGGCGGGCCCGGGCGCAAGGCCATGTGGTCGATGACGTGGCCGGCCGCGCTGATGTCGCACGGGATGCTCGGTA
TGCCCCTTTGGGTGACACTGGCATCCGGCACGCTGACCGCCGCCAACGATGGCGCGCGGATGGCAGCCACGTTTGCCGCC
ACGCTGGCGGCCAGCCTGGCTGCGTCGCATCTGTTCGGGCCGCCGCTTCAGTGGCTGCGACAGGGCGCGCGTGGCTGGCG
CGTGGCGGTTGCCGCCGCGATGCTGGCTGGCGCCGGTCTGGTCGCCGTGGCCGGCGCGCGGCTGGGGCGTGCCTGTGGCG
GCACCGTCATGACGGCGCGCGCCTGTATCGACACGGCCGACTTTTCGGAAGCCAGCTTCCTGGCCTGCGGGATCGCATTG
CTGTGCGTGGCGATGTTCGCCATGCATCGCGCCCAGGCGCGCGGATGGCTCCAGGGGCAGGCCGAGCTGGCAATGCACGA
CGATGTCGCCGATGACCATGCCACGATGCCTATGCTTCGGGCCGGTGACGGACGTGTTTCGCGCCGCGGGCCGGGCCGCA
TTCCCGGCCTGACGATCCGGCCTTCCGGCAGTGGCCTGTCACCGGTCGGCGAGTACAGCGTCAGCACCGACCTGCCAGAC
CGCACCGCCTTCGCCCGCTGGCTCGATCAAAGCATCGCCCATGCGCGCCTGGCAGAGACGGGATGCGCGGTGCTGCTGAT
CCATATTGCCGACTATCGCGAGGTCGACGAAGTTTTCGAGGTTCGTGCCGATGACATCCTGGCACAGGACGCGGGCGCGC
TCGCCCAGGCCGCGCTGGAGCCGCACGACTTCCTGGCACGGCTGGCGCGCGACGAGTTCGCCGTTGGCGTGCCCAATCTG
GTGCACCACAGCCGCGCGCATGACCTGGGCTCTCGCGTGCTCGGGTCTCTGGCCGAGTTCGTCGCGGCACGCGGCCTGCA
GATGCAGATCGGCGTGAACATCGGGATCGCGATTTATCCCCGCGATGCGGCTACATCCGAAGGGTTGATGCAGGCAGCGC
GCGTGAGTCTGTCGGAGGCGCGCGAAAGCGGTTCGAACCAGGTGCGCGTGTTCAACTCGGCCGCGGGGGAGCGCGCGCGC
CGCACGCGCGTGATCCGGCGCGACCTTTGGCCCGCCATTCAGGACGACGGCCTGTCGTTGATGTTCCAGCCGAAGTTCGA
CGTGAAGACGCGCCAGGTGGTGGGTGCCGAAGCGCTCTGCCGCTGGCGACATCCCACGCTGGGTGCGGTCAGTCCGGTCG
AATTCATCATGGTGGCCGAGCAGTCGGGCCAGATCGACAAGCTCGACGACTGGGTGATCTCGCGGGTCTGCGGGCAGGTG
CGAAGCTGGCAGGACGCTGGGCTGCCGGTGGTGCCGGTAGCGATCAACGTGTCCGGGACGCGTTTCGCGAGCCGCAACTT
TCCGCGCTATCTGCTCGAACATATCCACCAGCACGACATCCCGCCTTCTGCGATCACGCTGGAGATCACCGAGACCGCCG
CGATGAAGGACATCGCCAAGTCGCTGGAAACGCTGGCGGAGCTGCAATCGCTCGGCATCCAGGTGGCGCTCGACGATTTC
GGTAGCGGCTACTCGAGCCTTGGTTATCTGAAACGACTGCGCGTGGGCACCCTCAAGATCGATCGCACGCTGATCGGCGG
GCTCGATGCCGACCCGCAGGGTCGCGCCATCGTCGGCTCGATGGTGGCGCTGGCGCACGAGCTGCGGATGAAGGTGGTGG
CGGAGGGTGTCGAATCGGCCTCGCAACTGGAAATCCTGCACGGCATGGGCTGCGACGAAGTGCAGGGCTACCTGCTGGCC
GTTCCGCTCGACTCGCCCGGGTTTGCCGACGTATTGCACGCGGCACGGCCGCTGGCGGTCTAG

Upstream 100 bases:

>100_bases
GATTTACGAGGCATTTGCGAAGTGCCATGATGCGGGGCGCGCGCCAGGCACGCATCATGGCGCTTTCGGTGCCCCAGTAT
CTTCCATTCTTGTCGCCCCC

Downstream 100 bases:

>100_bases
AAGGCACGCTTCGCGAATCGGCACTAAAGAACGGTTCCATCGCGCCGATATGCCAATGAAAGGGCGTGCCGCGCGTATTG
CGGTCGCCCAAGCCGGCCCG

Product: Diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MIATSSSLLLLAALLGIAAAVGVRAAKTEGGPGRKAMWSMTWPAALMSHGMLGMPLWVTLASGTLTAANDGARMAATFAA
TLAASLAASHLFGPPLQWLRQGARGWRVAVAAAMLAGAGLVAVAGARLGRACGGTVMTARACIDTADFSEASFLACGIAL
LCVAMFAMHRAQARGWLQGQAELAMHDDVADDHATMPMLRAGDGRVSRRGPGRIPGLTIRPSGSGLSPVGEYSVSTDLPD
RTAFARWLDQSIAHARLAETGCAVLLIHIADYREVDEVFEVRADDILAQDAGALAQAALEPHDFLARLARDEFAVGVPNL
VHHSRAHDLGSRVLGSLAEFVAARGLQMQIGVNIGIAIYPRDAATSEGLMQAARVSLSEARESGSNQVRVFNSAAGERAR
RTRVIRRDLWPAIQDDGLSLMFQPKFDVKTRQVVGAEALCRWRHPTLGAVSPVEFIMVAEQSGQIDKLDDWVISRVCGQV
RSWQDAGLPVVPVAINVSGTRFASRNFPRYLLEHIHQHDIPPSAITLEITETAAMKDIAKSLETLAELQSLGIQVALDDF
GSGYSSLGYLKRLRVGTLKIDRTLIGGLDADPQGRAIVGSMVALAHELRMKVVAEGVESASQLEILHGMGCDEVQGYLLA
VPLDSPGFADVLHAARPLAV

Sequences:

>Translated_660_residues
MIATSSSLLLLAALLGIAAAVGVRAAKTEGGPGRKAMWSMTWPAALMSHGMLGMPLWVTLASGTLTAANDGARMAATFAA
TLAASLAASHLFGPPLQWLRQGARGWRVAVAAAMLAGAGLVAVAGARLGRACGGTVMTARACIDTADFSEASFLACGIAL
LCVAMFAMHRAQARGWLQGQAELAMHDDVADDHATMPMLRAGDGRVSRRGPGRIPGLTIRPSGSGLSPVGEYSVSTDLPD
RTAFARWLDQSIAHARLAETGCAVLLIHIADYREVDEVFEVRADDILAQDAGALAQAALEPHDFLARLARDEFAVGVPNL
VHHSRAHDLGSRVLGSLAEFVAARGLQMQIGVNIGIAIYPRDAATSEGLMQAARVSLSEARESGSNQVRVFNSAAGERAR
RTRVIRRDLWPAIQDDGLSLMFQPKFDVKTRQVVGAEALCRWRHPTLGAVSPVEFIMVAEQSGQIDKLDDWVISRVCGQV
RSWQDAGLPVVPVAINVSGTRFASRNFPRYLLEHIHQHDIPPSAITLEITETAAMKDIAKSLETLAELQSLGIQVALDDF
GSGYSSLGYLKRLRVGTLKIDRTLIGGLDADPQGRAIVGSMVALAHELRMKVVAEGVESASQLEILHGMGCDEVQGYLLA
VPLDSPGFADVLHAARPLAV
>Mature_660_residues
MIATSSSLLLLAALLGIAAAVGVRAAKTEGGPGRKAMWSMTWPAALMSHGMLGMPLWVTLASGTLTAANDGARMAATFAA
TLAASLAASHLFGPPLQWLRQGARGWRVAVAAAMLAGAGLVAVAGARLGRACGGTVMTARACIDTADFSEASFLACGIAL
LCVAMFAMHRAQARGWLQGQAELAMHDDVADDHATMPMLRAGDGRVSRRGPGRIPGLTIRPSGSGLSPVGEYSVSTDLPD
RTAFARWLDQSIAHARLAETGCAVLLIHIADYREVDEVFEVRADDILAQDAGALAQAALEPHDFLARLARDEFAVGVPNL
VHHSRAHDLGSRVLGSLAEFVAARGLQMQIGVNIGIAIYPRDAATSEGLMQAARVSLSEARESGSNQVRVFNSAAGERAR
RTRVIRRDLWPAIQDDGLSLMFQPKFDVKTRQVVGAEALCRWRHPTLGAVSPVEFIMVAEQSGQIDKLDDWVISRVCGQV
RSWQDAGLPVVPVAINVSGTRFASRNFPRYLLEHIHQHDIPPSAITLEITETAAMKDIAKSLETLAELQSLGIQVALDDF
GSGYSSLGYLKRLRVGTLKIDRTLIGGLDADPQGRAIVGSMVALAHELRMKVVAEGVESASQLEILHGMGCDEVQGYLLA
VPLDSPGFADVLHAARPLAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=413, Percent_Identity=30.9927360774818, Blast_Score=200, Evalue=3e-52,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=26.7281105990783, Blast_Score=173, Evalue=4e-44,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=27.511961722488, Blast_Score=163, Evalue=4e-41,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=34.1666666666667, Blast_Score=139, Evalue=8e-34,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=32.7935222672065, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=31.3253012048193, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI87081845, Length=255, Percent_Identity=30.9803921568627, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=32.5102880658436, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI1788849, Length=363, Percent_Identity=28.3746556473829, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=30.8641975308642, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1786507, Length=273, Percent_Identity=28.9377289377289, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI87082096, Length=154, Percent_Identity=33.7662337662338, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1789650, Length=417, Percent_Identity=22.7817745803357, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1787410, Length=131, Percent_Identity=29.0076335877863, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 70069; Mature: 70069

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATSSSLLLLAALLGIAAAVGVRAAKTEGGPGRKAMWSMTWPAALMSHGMLGMPLWVTL
CCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCEEEE
ASGTLTAANDGARMAATFAATLAASLAASHLFGPPLQWLRQGARGWRVAVAAAMLAGAGL
ECCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHCCCH
VAVAGARLGRACGGTVMTARACIDTADFSEASFLACGIALLCVAMFAMHRAQARGWLQGQ
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AELAMHDDVADDHATMPMLRAGDGRVSRRGPGRIPGLTIRPSGSGLSPVGEYSVSTDLPD
CCEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
RTAFARWLDQSIAHARLAETGCAVLLIHIADYREVDEVFEVRADDILAQDAGALAQAALE
HHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PHDFLARLARDEFAVGVPNLVHHSRAHDLGSRVLGSLAEFVAARGLQMQIGVNIGIAIYP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEC
RDAATSEGLMQAARVSLSEARESGSNQVRVFNSAAGERARRTRVIRRDLWPAIQDDGLSL
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCEE
MFQPKFDVKTRQVVGAEALCRWRHPTLGAVSPVEFIMVAEQSGQIDKLDDWVISRVCGQV
EEECCCCCCHHHHHCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
RSWQDAGLPVVPVAINVSGTRFASRNFPRYLLEHIHQHDIPPSAITLEITETAAMKDIAK
HCHHHCCCCEEEEEEECCCCCHHCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH
SLETLAELQSLGIQVALDDFGSGYSSLGYLKRLRVGTLKIDRTLIGGLDADPQGRAIVGS
HHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCEEEECHHHCCCCCCCCCCCHHHHH
MVALAHELRMKVVAEGVESASQLEILHGMGCDEVQGYLLAVPLDSPGFADVLHAARPLAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MIATSSSLLLLAALLGIAAAVGVRAAKTEGGPGRKAMWSMTWPAALMSHGMLGMPLWVTL
CCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCCCEEEE
ASGTLTAANDGARMAATFAATLAASLAASHLFGPPLQWLRQGARGWRVAVAAAMLAGAGL
ECCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHCCCH
VAVAGARLGRACGGTVMTARACIDTADFSEASFLACGIALLCVAMFAMHRAQARGWLQGQ
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AELAMHDDVADDHATMPMLRAGDGRVSRRGPGRIPGLTIRPSGSGLSPVGEYSVSTDLPD
CCEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
RTAFARWLDQSIAHARLAETGCAVLLIHIADYREVDEVFEVRADDILAQDAGALAQAALE
HHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PHDFLARLARDEFAVGVPNLVHHSRAHDLGSRVLGSLAEFVAARGLQMQIGVNIGIAIYP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEC
RDAATSEGLMQAARVSLSEARESGSNQVRVFNSAAGERARRTRVIRRDLWPAIQDDGLSL
CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCEE
MFQPKFDVKTRQVVGAEALCRWRHPTLGAVSPVEFIMVAEQSGQIDKLDDWVISRVCGQV
EEECCCCCCHHHHHCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
RSWQDAGLPVVPVAINVSGTRFASRNFPRYLLEHIHQHDIPPSAITLEITETAAMKDIAK
HCHHHCCCCEEEEEEECCCCCHHCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH
SLETLAELQSLGIQVALDDFGSGYSSLGYLKRLRVGTLKIDRTLIGGLDADPQGRAIVGS
HHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCEEEECHHHCCCCCCCCCCCHHHHH
MVALAHELRMKVVAEGVESASQLEILHGMGCDEVQGYLLAVPLDSPGFADVLHAARPLAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]