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The map label for this gene is radC [C]

Identifier: 93006943

GI number: 93006943

Start: 2592883

End: 2593566

Strand: Direct

Name: radC [C]

Synonym: Pcryo_2119

Alternate gene names: 93006943

Gene position: 2592883-2593566 (Clockwise)

Preceding gene: 93006940

Following gene: 93006944

Centisome position: 84.74

GC content: 47.95

Gene sequence:

>684_bases
ATGGCAATCAAAGACTGGCATGAGGATGATAGACCGCGTGAGAAGCTATTAAAATTTGGCGCCGCGCACTTATCCGACGC
TGAGATATTGGCGATATTTCTGCGCACGGGCACACAGTCGCAGTCAGCCATTGAGCTGGCTCGCCATCTGATCGAGCAAT
TTGGTAGCCTTGCAGAGCTGTTAGCAGCGCCGCAAGAAACTGTCCTTGCTTGTCACGGCATCGGTCCTGCCAAATACGCG
CAGATACTCGCCTCACTTGAAATGGGCAGACGCTATTTGGACAGTCAGCTTAAAACGGGTCAAGGACTTGGACGCTCGCA
AATGGTCAAAGACTATATCAGCACTCAGTTGCGCGGTGAGCCGCGAGAAGTGTTCGCTGTGCTATGTTTGGACAATGCCT
TGAATCTAATCAATTTTGAGATATTGTTTACAGGCGGCATCTCTTCTTGCTCCGTCTGTATCAAGCATGTGCTACGTCAT
GCGTTAAGCCATGCAGCAAGCCAGCTCATTATTGCTCACAACCATCCGCATACCGATGCTAAGCCATCAACGGCGGATAA
CTTGTTAACCTATGAGCTCAAAAAAGCTTGTGACCTTATAGATTTGTCTTTGATTGACCATGTCATCGTTGGGCGCAATG
AGACTTTATCTTATGCTGAAAACAGTTTACCGCCTTTTAACTAA

Upstream 100 bases:

>100_bases
AAATTGAAAGATAAAATTGCGCTTATAGTAGCAATTATGCGATAAGTTAGGGAAAGTTTTCTAAATTTATCTCATCGCAA
GTGCATCTTAAGGAATAAGC

Downstream 100 bases:

>100_bases
TGTTTAATGACTCGCATTTGGTTATATACACAAATCTTGATACATATTATCGACACAGCGTAGCGTTTTCGCTCTTGATA
GTTATAAACAACTGTTTCAT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MAIKDWHEDDRPREKLLKFGAAHLSDAEILAIFLRTGTQSQSAIELARHLIEQFGSLAELLAAPQETVLACHGIGPAKYA
QILASLEMGRRYLDSQLKTGQGLGRSQMVKDYISTQLRGEPREVFAVLCLDNALNLINFEILFTGGISSCSVCIKHVLRH
ALSHAASQLIIAHNHPHTDAKPSTADNLLTYELKKACDLIDLSLIDHVIVGRNETLSYAENSLPPFN

Sequences:

>Translated_227_residues
MAIKDWHEDDRPREKLLKFGAAHLSDAEILAIFLRTGTQSQSAIELARHLIEQFGSLAELLAAPQETVLACHGIGPAKYA
QILASLEMGRRYLDSQLKTGQGLGRSQMVKDYISTQLRGEPREVFAVLCLDNALNLINFEILFTGGISSCSVCIKHVLRH
ALSHAASQLIIAHNHPHTDAKPSTADNLLTYELKKACDLIDLSLIDHVIVGRNETLSYAENSLPPFN
>Mature_226_residues
AIKDWHEDDRPREKLLKFGAAHLSDAEILAIFLRTGTQSQSAIELARHLIEQFGSLAELLAAPQETVLACHGIGPAKYAQ
ILASLEMGRRYLDSQLKTGQGLGRSQMVKDYISTQLRGEPREVFAVLCLDNALNLINFEILFTGGISSCSVCIKHVLRHA
LSHAASQLIIAHNHPHTDAKPSTADNLLTYELKKACDLIDLSLIDHVIVGRNETLSYAENSLPPFN

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=210, Percent_Identity=41.9047619047619, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1788997, Length=132, Percent_Identity=39.3939393939394, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788312, Length=134, Percent_Identity=38.0597014925373, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367100, Length=134, Percent_Identity=38.0597014925373, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25018; Mature: 24887

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKDWHEDDRPREKLLKFGAAHLSDAEILAIFLRTGTQSQSAIELARHLIEQFGSLAEL
CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LAAPQETVLACHGIGPAKYAQILASLEMGRRYLDSQLKTGQGLGRSQMVKDYISTQLRGE
HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
PREVFAVLCLDNALNLINFEILFTGGISSCSVCIKHVLRHALSHAASQLIIAHNHPHTDA
HHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCC
KPSTADNLLTYELKKACDLIDLSLIDHVIVGRNETLSYAENSLPPFN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
AIKDWHEDDRPREKLLKFGAAHLSDAEILAIFLRTGTQSQSAIELARHLIEQFGSLAEL
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LAAPQETVLACHGIGPAKYAQILASLEMGRRYLDSQLKTGQGLGRSQMVKDYISTQLRGE
HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
PREVFAVLCLDNALNLINFEILFTGGISSCSVCIKHVLRHALSHAASQLIIAHNHPHTDA
HHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCC
KPSTADNLLTYELKKACDLIDLSLIDHVIVGRNETLSYAENSLPPFN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA