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The map label for this gene is yjgF [C]

Identifier: 93006830

GI number: 93006830

Start: 2467211

End: 2467591

Strand: Direct

Name: yjgF [C]

Synonym: Pcryo_2006

Alternate gene names: 93006830

Gene position: 2467211-2467591 (Clockwise)

Preceding gene: 93006829

Following gene: 93006831

Centisome position: 80.63

GC content: 41.99

Gene sequence:

>381_bases
ATGACACGTCAAACCATCCAAACGGATAAAGCACCTGCAGCCGTTGGCACTTACTCACAAGCGGTAAAAGTTGGCAATAC
TGTTTATATTTCAGGTCAGCTAGGTTTTGACCCTATCACCATGGAACTAAAAGAAGGGTTTGATGCACAAGCGAAGCAAG
TATTTGAAAACATCAAAGCCATTTGTGAAGCTGCTGGTGGCAGCTTAAATGACGTGGTCAAATTCAATGTATCGTTAACT
GATTTAAATGATTTTGCAGCATTAAACGAAGTATTCATGGCCAATTTGACTGAACCTTATCCTGCCCGCGCAGCGGTGCA
AGTAGCGGCATTGCCTAAAGGTGGCGTGGTCGAAATTGAGTCTATTCTATATATTGAATAA

Upstream 100 bases:

>100_bases
TTGAAATGTGTAAAACTTTTAATCGTGCTAAACACTTCTACTAACTTTTAGAAAATAGCTTTAGCACATCAAACACCAAA
AAATATGATAAGGATATATC

Downstream 100 bases:

>100_bases
GTTAGATATTCAATACTGCTTGAATAACAATATTTCATATTAGATCACCATAAGCTTAGCCTCATGCTAAGCTTATTCGT
CTCTCCCTCTTTATTTTTAT

Product: YjgF-like protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MTRQTIQTDKAPAAVGTYSQAVKVGNTVYISGQLGFDPITMELKEGFDAQAKQVFENIKAICEAAGGSLNDVVKFNVSLT
DLNDFAALNEVFMANLTEPYPARAAVQVAALPKGGVVEIESILYIE

Sequences:

>Translated_126_residues
MTRQTIQTDKAPAAVGTYSQAVKVGNTVYISGQLGFDPITMELKEGFDAQAKQVFENIKAICEAAGGSLNDVVKFNVSLT
DLNDFAALNEVFMANLTEPYPARAAVQVAALPKGGVVEIESILYIE
>Mature_125_residues
TRQTIQTDKAPAAVGTYSQAVKVGNTVYISGQLGFDPITMELKEGFDAQAKQVFENIKAICEAAGGSLNDVVKFNVSLTD
LNDFAALNEVFMANLTEPYPARAAVQVAALPKGGVVEIESILYIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=49.5934959349593, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87082396, Length=122, Percent_Identity=47.5409836065574, Blast_Score=107, Evalue=3e-25,
Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=45.5284552845528, Blast_Score=104, Evalue=2e-24,
Organism=Escherichia coli, GI1787245, Length=116, Percent_Identity=33.6206896551724, Blast_Score=62, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=54.0983606557377, Blast_Score=135, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=54.0983606557377, Blast_Score=135, Evalue=5e-33,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=54.0983606557377, Blast_Score=135, Evalue=5e-33,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=38.8429752066116, Blast_Score=91, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=40.5940594059406, Blast_Score=77, Evalue=7e-16,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=43.9024390243902, Blast_Score=97, Evalue=4e-21,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13472; Mature: 13341

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQTIQTDKAPAAVGTYSQAVKVGNTVYISGQLGFDPITMELKEGFDAQAKQVFENIKA
CCCCCCCCCCCCCCCCCHHHHEECCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHH
ICEAAGGSLNDVVKFNVSLTDLNDFAALNEVFMANLTEPYPARAAVQVAALPKGGVVEIE
HHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEE
SILYIE
EEEEEC
>Mature Secondary Structure 
TRQTIQTDKAPAAVGTYSQAVKVGNTVYISGQLGFDPITMELKEGFDAQAKQVFENIKA
CCCCCCCCCCCCCCCCHHHHEECCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHH
ICEAAGGSLNDVVKFNVSLTDLNDFAALNEVFMANLTEPYPARAAVQVAALPKGGVVEIE
HHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEE
SILYIE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]