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The map label for this gene is rpoZ

Identifier: 93006828

GI number: 93006828

Start: 2464252

End: 2464512

Strand: Direct

Name: rpoZ

Synonym: Pcryo_2004

Alternate gene names: 93006828

Gene position: 2464252-2464512 (Clockwise)

Preceding gene: 93006827

Following gene: 93006829

Centisome position: 80.53

GC content: 43.68

Gene sequence:

>261_bases
ATGGCACGAGTGACGATTGAAGATTGTTTGGATAATGTTGATAATCGCTTTGAGCTGGTTCTGGTCGCAAGCAAGCGCGC
ACGTCAGTTGGCTAAAGGCATTGCAGAGCCGTTGGTTGATGTTGATAACGACAAGCCAACAGTATTGGCATTACGTGAAA
TCGCTGCTGGTAAAATTACCCGTGATATTTTAAATCAGCCAGAGCATAACTTTGCTACTAGCTCGTTAGATTTAGCATTG
TCAGGCGATCATAGCTTCTAA

Upstream 100 bases:

>100_bases
TGCTATAATGTCTAGCTATCCCCTTTTATATTTTTGATATTATTTTTATTGAGTGGCGCGCCATGCTCGCAACCAGTAAA
AACAACCGAGGTAGCTATTT

Downstream 100 bases:

>100_bases
TAAATTACCGTAAAAAGTATGAATTTAGCAAGCATACGAGTATTGACTGACGATAGAGACCACAGCATAGGCTGTGGTTT
TTTGGTTGTAATGATACTGG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MARVTIEDCLDNVDNRFELVLVASKRARQLAKGIAEPLVDVDNDKPTVLALREIAAGKITRDILNQPEHNFATSSLDLAL
SGDHSF

Sequences:

>Translated_86_residues
MARVTIEDCLDNVDNRFELVLVASKRARQLAKGIAEPLVDVDNDKPTVLALREIAAGKITRDILNQPEHNFATSSLDLAL
SGDHSF
>Mature_85_residues
ARVTIEDCLDNVDNRFELVLVASKRARQLAKGIAEPLVDVDNDKPTVLALREIAAGKITRDILNQPEHNFATSSLDLALS
GDHSF

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=65, Percent_Identity=55.3846153846154, Blast_Score=73, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_PSYA2 (Q4FQY6)

Other databases:

- EMBL:   CP000082
- RefSeq:   YP_265006.1
- STRING:   Q4FQY6
- GeneID:   3515692
- GenomeReviews:   CP000082_GR
- KEGG:   par:Psyc_1724
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- PhylomeDB:   Q4FQY6
- ProtClustDB:   PRK00392
- BioCyc:   PARC259536:PSYC_1724-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9444; Mature: 9313

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTIEDCLDNVDNRFELVLVASKRARQLAKGIAEPLVDVDNDKPTVLALREIAAGKIT
CCEEEHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
RDILNQPEHNFATSSLDLALSGDHSF
HHHHCCCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
ARVTIEDCLDNVDNRFELVLVASKRARQLAKGIAEPLVDVDNDKPTVLALREIAAGKIT
CEEEHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
RDILNQPEHNFATSSLDLALSGDHSF
HHHHCCCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA