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The map label for this gene is ypjD [H]

Identifier: 93006810

GI number: 93006810

Start: 2446187

End: 2446993

Strand: Direct

Name: ypjD [H]

Synonym: Pcryo_1986

Alternate gene names: 93006810

Gene position: 2446187-2446993 (Clockwise)

Preceding gene: 93006802

Following gene: 93006813

Centisome position: 79.94

GC content: 44.24

Gene sequence:

>807_bases
ATGAGGTTTTATATCTTGCAACTTGCATTTTTACTTGCTGCGATGGCTTATTTCTTAGTCAGCATCTATATTGGTTGGGC
GCTGATTCAAGATAGACCTATCCATAAAGGCCCAAGCTTAGGCTTATTATTTGTGGGCATGTTGGCACACGCAGGGCTAC
TTTATCCACACATAGTCACACTCTATGGGCTAAATTTCAATCTGTTTAATATCATCAGCTTGATCAGCTTATTCTTTTTG
TTTTTTTACGTCATGTTTTCTCTGTATCGACCTATTGTCAGTCTGGGTATCCTCGCGGCACCGACTGCTCTTGTAGGTAT
GCTAATCGGCTATACTGGACGCGCGCCGTATCGTCCGATTACGGATATTAGCATTGGGCTTGAGTCTCATATCTTGCTGT
CGCTTGCCGCATATTGTGTGCTGCTGATGGCAGCGGTACAAGCGCTATTTTTGCGACTACAAATACGTGAGCTCAAGCAT
CAATCGATTCACCGCTTTTGGGTCAACAAGCTGCCGTCTCTTCAAAGCATGGAGAGCCTATTATTCGATATGCTATTGGT
CGGCTTTGTCCTGCTTAGTATCGCACTGGGTATTGGCTTTATTTACGTAGACGACTTGATGGCGCAGCATCTTGTGCACA
AAACAGCCTTTAGCCTGATGTCTTGGCTACTGTTTGGCGCGTTACTTATCGGTAATTGGCGTGCTGGATGGCGCGGAAAA
CGTGCCGCTAATATGACTATCTATGCTTTTATTTTATTAGCGATTGGCTTTGTCGGTAGCAAGTTTGTATTAGAGATGCT
GTTATAG

Upstream 100 bases:

>100_bases
ACGGTGCTCAATTGAGTGCCATTTTATGATAAATTGGGTAATTATTCTAATAATACCACTTTAGCATGAAATTAAGCGCG
TATTTTGCGCGCATTATGAG

Downstream 100 bases:

>100_bases
AACCAGTTCCACAGTAGTAATATAGTAAAAAGCTGCGAGTATTAAATAATAATACTCGCAGCTTTTTTATTAAATATCTT
TTAATACTCTGTTCTAAATT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MRFYILQLAFLLAAMAYFLVSIYIGWALIQDRPIHKGPSLGLLFVGMLAHAGLLYPHIVTLYGLNFNLFNIISLISLFFL
FFYVMFSLYRPIVSLGILAAPTALVGMLIGYTGRAPYRPITDISIGLESHILLSLAAYCVLLMAAVQALFLRLQIRELKH
QSIHRFWVNKLPSLQSMESLLFDMLLVGFVLLSIALGIGFIYVDDLMAQHLVHKTAFSLMSWLLFGALLIGNWRAGWRGK
RAANMTIYAFILLAIGFVGSKFVLEMLL

Sequences:

>Translated_268_residues
MRFYILQLAFLLAAMAYFLVSIYIGWALIQDRPIHKGPSLGLLFVGMLAHAGLLYPHIVTLYGLNFNLFNIISLISLFFL
FFYVMFSLYRPIVSLGILAAPTALVGMLIGYTGRAPYRPITDISIGLESHILLSLAAYCVLLMAAVQALFLRLQIRELKH
QSIHRFWVNKLPSLQSMESLLFDMLLVGFVLLSIALGIGFIYVDDLMAQHLVHKTAFSLMSWLLFGALLIGNWRAGWRGK
RAANMTIYAFILLAIGFVGSKFVLEMLL
>Mature_268_residues
MRFYILQLAFLLAAMAYFLVSIYIGWALIQDRPIHKGPSLGLLFVGMLAHAGLLYPHIVTLYGLNFNLFNIISLISLFFL
FFYVMFSLYRPIVSLGILAAPTALVGMLIGYTGRAPYRPITDISIGLESHILLSLAAYCVLLMAAVQALFLRLQIRELKH
QSIHRFWVNKLPSLQSMESLLFDMLLVGFVLLSIALGIGFIYVDDLMAQHLVHKTAFSLMSWLLFGALLIGNWRAGWRGK
RAANMTIYAFILLAIGFVGSKFVLEMLL

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=206, Percent_Identity=28.6407766990291, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30142; Mature: 30142

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFYILQLAFLLAAMAYFLVSIYIGWALIQDRPIHKGPSLGLLFVGMLAHAGLLYPHIVT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LYGLNFNLFNIISLISLFFLFFYVMFSLYRPIVSLGILAAPTALVGMLIGYTGRAPYRPI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TDISIGLESHILLSLAAYCVLLMAAVQALFLRLQIRELKHQSIHRFWVNKLPSLQSMESL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LFDMLLVGFVLLSIALGIGFIYVDDLMAQHLVHKTAFSLMSWLLFGALLIGNWRAGWRGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
RAANMTIYAFILLAIGFVGSKFVLEMLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]