Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
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Accession | NC_007969 |
Length | 3,059,876 |
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The map label for this gene is dcyD [H]
Identifier: 93006652
GI number: 93006652
Start: 2257246
End: 2258268
Strand: Direct
Name: dcyD [H]
Synonym: Pcryo_1828
Alternate gene names: 93006652
Gene position: 2257246-2258268 (Clockwise)
Preceding gene: 93006651
Following gene: 93006653
Centisome position: 73.77
GC content: 45.36
Gene sequence:
>1023_bases ATGCAAAATAAATCTATACCAAGCCTGCCGAGTATGAATCGGCAACCTTTAGGGTTTTTCCCAACGCCGTTGATTGAGCT GACCAGATTAAGCAAAGCACTCGATGGTCCTAAAATTTATATGAAACGCGATGACAATACGGGACTGGCATTAGGCGGTA ATAAAACCAGAAAGCTTGAATTTATCATTGGGGACGCTCTTGCTCAAGGTGCGGATACAATCGTGACAGCAGGTGCCGCG CAGTCAAACCATTGTCGCCAGACCGCAGCTGCCGCAGCCAGTTTGGGACTTGAATGCCATTTAGTTTTGGGTGGACAAGA ACCAGAACAGTTGCAAGGCAATCTCTTACTGGATAAGATTTTTGGCTGTCATATCCACTGGGCAGGCAGCAACCGTAAAG GGGAAGACATACCTGATATCGTAGAACAACTCAAAAAAGAAGGTAAGAAACCTTACATTGTTCCTTATGGCGGCTCAAGC GAGCTCGGTGCTTTTGCCTTTGTTGAAGCGTTTAAAGAGCTTGAATTACAACGTCAAGAGATGGATATCTCATTCACGCA TATCGTTTTTGCCTCCAGCTCCGGCGGGACACAAGCGGGCTTGATGCTGGGCAATAAAATCTTTAACTCGCCTTATCAGG TAGTGGGCATCAATATTGATAAAAGTGAAACCGATAAAGTGCCGTTTGATCAGTATATCATCTCCCTCACCAATAGCACG GCGGCATTGATTGGGGCAGATTACACCTTCTCAGAGGCAGATTTAGTGCTTAACTCTGATTATGTGGGAGACGGTTATGG AGTGATTGGTGCACTAGAAAATGAAGCCATTGCCATGACCGCGCAAATGGAAGGGATATTATTAGATCCTGTTTATACAG GTCGTGCGATGGGCGGACTACTCGATATGATTCGTACCGGTAAAATCAAAAAAACGGACAGTGTGTTGTTTTGGCATACT GGCGGCGCGCCCGCTTTATTTGCTTATGCTAGTGATTTAGCAGTATCTCAAAGCGATAGTTAA
Upstream 100 bases:
>100_bases AGCTTATAATTATAGGAAATCCGTATGACTCCAATCGTTATTATGGTCGGATATTATTCCAAAGTATCTGTAACTTGCCC TATCTCAGAGAGGATGAATG
Downstream 100 bases:
>100_bases TCTGTCTAGCGCTATCAAAAAGATCGGCTAATTAAGGCTAGCCGATCTTTTTAACAAGCTTTCCATCACTATAAAATCTA AACTTTTATTTCTAGATATC
Product: D-cysteine desulfhydrase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MQNKSIPSLPSMNRQPLGFFPTPLIELTRLSKALDGPKIYMKRDDNTGLALGGNKTRKLEFIIGDALAQGADTIVTAGAA QSNHCRQTAAAAASLGLECHLVLGGQEPEQLQGNLLLDKIFGCHIHWAGSNRKGEDIPDIVEQLKKEGKKPYIVPYGGSS ELGAFAFVEAFKELELQRQEMDISFTHIVFASSSGGTQAGLMLGNKIFNSPYQVVGINIDKSETDKVPFDQYIISLTNST AALIGADYTFSEADLVLNSDYVGDGYGVIGALENEAIAMTAQMEGILLDPVYTGRAMGGLLDMIRTGKIKKTDSVLFWHT GGAPALFAYASDLAVSQSDS
Sequences:
>Translated_340_residues MQNKSIPSLPSMNRQPLGFFPTPLIELTRLSKALDGPKIYMKRDDNTGLALGGNKTRKLEFIIGDALAQGADTIVTAGAA QSNHCRQTAAAAASLGLECHLVLGGQEPEQLQGNLLLDKIFGCHIHWAGSNRKGEDIPDIVEQLKKEGKKPYIVPYGGSS ELGAFAFVEAFKELELQRQEMDISFTHIVFASSSGGTQAGLMLGNKIFNSPYQVVGINIDKSETDKVPFDQYIISLTNST AALIGADYTFSEADLVLNSDYVGDGYGVIGALENEAIAMTAQMEGILLDPVYTGRAMGGLLDMIRTGKIKKTDSVLFWHT GGAPALFAYASDLAVSQSDS >Mature_340_residues MQNKSIPSLPSMNRQPLGFFPTPLIELTRLSKALDGPKIYMKRDDNTGLALGGNKTRKLEFIIGDALAQGADTIVTAGAA QSNHCRQTAAAAASLGLECHLVLGGQEPEQLQGNLLLDKIFGCHIHWAGSNRKGEDIPDIVEQLKKEGKKPYIVPYGGSS ELGAFAFVEAFKELELQRQEMDISFTHIVFASSSGGTQAGLMLGNKIFNSPYQVVGINIDKSETDKVPFDQYIISLTNST AALIGADYTFSEADLVLNSDYVGDGYGVIGALENEAIAMTAQMEGILLDPVYTGRAMGGLLDMIRTGKIKKTDSVLFWHT GGAPALFAYASDLAVSQSDS
Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]
COG id: COG2515
COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]
Homologues:
Organism=Escherichia coli, GI87082000, Length=315, Percent_Identity=42.5396825396825, Blast_Score=227, Evalue=8e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005966 - InterPro: IPR001926 [H]
Pfam domain/function: PF00291 PALP [H]
EC number: =4.4.1.15 [H]
Molecular weight: Translated: 36457; Mature: 36457
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNKSIPSLPSMNRQPLGFFPTPLIELTRLSKALDGPKIYMKRDDNTGLALGGNKTRKLE CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCEEEE FIIGDALAQGADTIVTAGAAQSNHCRQTAAAAASLGLECHLVLGGQEPEQLQGNLLLDKI EEEEHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCEEEEEH FGCHIHWAGSNRKGEDIPDIVEQLKKEGKKPYIVPYGGSSELGAFAFVEAFKELELQRQE CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH MDISFTHIVFASSSGGTQAGLMLGNKIFNSPYQVVGINIDKSETDKVPFDQYIISLTNST CCEEEEEEEEEECCCCCEEHEEECHHHHCCCEEEEEEEECCCCCCCCCHHHEEEEECCCC AALIGADYTFSEADLVLNSDYVGDGYGVIGALENEAIAMTAQMEGILLDPVYTGRAMGGL EEEEECCCEECCCCEEEECCCCCCCCEEEEEECCCEEEEEEEECCEEECCCCCCHHHHHH LDMIRTGKIKKTDSVLFWHTGGAPALFAYASDLAVSQSDS HHHHHCCCCCCCCCEEEEECCCCCEEEEEHHHHEECCCCC >Mature Secondary Structure MQNKSIPSLPSMNRQPLGFFPTPLIELTRLSKALDGPKIYMKRDDNTGLALGGNKTRKLE CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCEEEE FIIGDALAQGADTIVTAGAAQSNHCRQTAAAAASLGLECHLVLGGQEPEQLQGNLLLDKI EEEEHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCEEEEEH FGCHIHWAGSNRKGEDIPDIVEQLKKEGKKPYIVPYGGSSELGAFAFVEAFKELELQRQE CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH MDISFTHIVFASSSGGTQAGLMLGNKIFNSPYQVVGINIDKSETDKVPFDQYIISLTNST CCEEEEEEEEEECCCCCEEHEEECHHHHCCCEEEEEEEECCCCCCCCCHHHEEEEECCCC AALIGADYTFSEADLVLNSDYVGDGYGVIGALENEAIAMTAQMEGILLDPVYTGRAMGGL EEEEECCCEECCCCEEEECCCCCCCCEEEEEECCCEEEEEEEECCEEECCCCCCHHHHHH LDMIRTGKIKKTDSVLFWHTGGAPALFAYASDLAVSQSDS HHHHHCCCCCCCCCEEEEECCCCCEEEEEHHHHEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA