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The map label for this gene is yqhC [H]

Identifier: 93006644

GI number: 93006644

Start: 2245638

End: 2246492

Strand: Direct

Name: yqhC [H]

Synonym: Pcryo_1820

Alternate gene names: 93006644

Gene position: 2245638-2246492 (Clockwise)

Preceding gene: 93006641

Following gene: 93006646

Centisome position: 73.39

GC content: 38.6

Gene sequence:

>855_bases
ATGCAGTTAAAGACCATTGAGCAGTTACTTAAAATATTACTCAAAAATAAAACGATCGAATCTACTATTCCAAACTTATT
TTTCTATTGCGCTGACAGACCAAGTAAAACCGTCAGCTATATTCAAGAGCCTAGCATATGTATCGTCCTACAAGGCGAGC
GCGAGATTTACTTAGGAAAAGATTGCCAAAAATTTGACAATAGCAGCCTGATGTTTTGCCCTGTCGATATTCCTTTAAGT
ATGCATATTAAGCATGCTTCGTCAGACCATCCTGTCATCGTTTTATCAATGAAATTAAATCTTGTGATGATTCAAGAAGT
ACTCGCTAGAATACCGCCTCAACAACAAGTAAAAGAAGGTTATTTGGGAATAAAATGGCAATTAGATGACGCTATAATGC
AAGCGTTTGAGCGATTGGTAAACTTACTTGATTGTCCAAATGATACTGGTTTTTTATCTTCTTTAATACAGCAAGAAATT
TATTATCGCCTGCTCTCGGCACAACAAGGGAATAAGTTGCGACAACTGGTCATCAATGGCAGTCATACTCACCGTATTGC
ACAAGCAACCGATTGGCTAAAAGCGCATTTAGACGAACCTGTGGTGATTGGAGACTTGGCGAGCCGATGTGGTATGAGTA
TCTCAGGTTTTCACCAACACTTTAAAGAGATTACACAGTTGAGTCCGCTACAGTATCAAAAAAAATTACGATTAATGGAA
GCGAGGCGTCTGATCATAACCAATGACTCTCAAATATCACAGATTGCCATGCAAGTAGGCTACGAAAGCCCCAGCCAATT
TAGCCGAGAATATAAACGATTATTTGGAAACAGTCCAAATAGCGATTTGAGTTAA

Upstream 100 bases:

>100_bases
GATACGCAACCAACAATTCGTTAGAACAGTCCTACAAAACTCTTGCCTAATTATCCAAAAATTTATATTATCAAGCAAAC
CTAAAAGTAAGCGAAAAATT

Downstream 100 bases:

>100_bases
GGGGTTGAAAAAACTGGTGAAGTTATTACTGCAAATGAGTATTTTTTGAAATGGTAATCTTCCAGGTTGATGTCTTCCAA
GTTAATGTCTACGAATTTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MQLKTIEQLLKILLKNKTIESTIPNLFFYCADRPSKTVSYIQEPSICIVLQGEREIYLGKDCQKFDNSSLMFCPVDIPLS
MHIKHASSDHPVIVLSMKLNLVMIQEVLARIPPQQQVKEGYLGIKWQLDDAIMQAFERLVNLLDCPNDTGFLSSLIQQEI
YYRLLSAQQGNKLRQLVINGSHTHRIAQATDWLKAHLDEPVVIGDLASRCGMSISGFHQHFKEITQLSPLQYQKKLRLME
ARRLIITNDSQISQIAMQVGYESPSQFSREYKRLFGNSPNSDLS

Sequences:

>Translated_284_residues
MQLKTIEQLLKILLKNKTIESTIPNLFFYCADRPSKTVSYIQEPSICIVLQGEREIYLGKDCQKFDNSSLMFCPVDIPLS
MHIKHASSDHPVIVLSMKLNLVMIQEVLARIPPQQQVKEGYLGIKWQLDDAIMQAFERLVNLLDCPNDTGFLSSLIQQEI
YYRLLSAQQGNKLRQLVINGSHTHRIAQATDWLKAHLDEPVVIGDLASRCGMSISGFHQHFKEITQLSPLQYQKKLRLME
ARRLIITNDSQISQIAMQVGYESPSQFSREYKRLFGNSPNSDLS
>Mature_284_residues
MQLKTIEQLLKILLKNKTIESTIPNLFFYCADRPSKTVSYIQEPSICIVLQGEREIYLGKDCQKFDNSSLMFCPVDIPLS
MHIKHASSDHPVIVLSMKLNLVMIQEVLARIPPQQQVKEGYLGIKWQLDDAIMQAFERLVNLLDCPNDTGFLSSLIQQEI
YYRLLSAQQGNKLRQLVINGSHTHRIAQATDWLKAHLDEPVVIGDLASRCGMSISGFHQHFKEITQLSPLQYQKKLRLME
ARRLIITNDSQISQIAMQVGYESPSQFSREYKRLFGNSPNSDLS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=276, Percent_Identity=31.8840579710145, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790339, Length=162, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32480; Mature: 32480

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLKTIEQLLKILLKNKTIESTIPNLFFYCADRPSKTVSYIQEPSICIVLQGEREIYLGK
CCHHHHHHHHHHHHHCCCHHHHHCHHEEEECCCCCHHHHHHCCCCEEEEEECCCEEEECC
DCQKFDNSSLMFCPVDIPLSMHIKHASSDHPVIVLSMKLNLVMIQEVLARIPPQQQVKEG
CHHHCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHCC
YLGIKWQLDDAIMQAFERLVNLLDCPNDTGFLSSLIQQEIYYRLLSAQQGNKLRQLVING
CCEEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECC
SHTHRIAQATDWLKAHLDEPVVIGDLASRCGMSISGFHQHFKEITQLSPLQYQKKLRLME
CCHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
ARRLIITNDSQISQIAMQVGYESPSQFSREYKRLFGNSPNSDLS
HCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQLKTIEQLLKILLKNKTIESTIPNLFFYCADRPSKTVSYIQEPSICIVLQGEREIYLGK
CCHHHHHHHHHHHHHCCCHHHHHCHHEEEECCCCCHHHHHHCCCCEEEEEECCCEEEECC
DCQKFDNSSLMFCPVDIPLSMHIKHASSDHPVIVLSMKLNLVMIQEVLARIPPQQQVKEG
CHHHCCCCCEEEEEECCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHCC
YLGIKWQLDDAIMQAFERLVNLLDCPNDTGFLSSLIQQEIYYRLLSAQQGNKLRQLVING
CCEEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECC
SHTHRIAQATDWLKAHLDEPVVIGDLASRCGMSISGFHQHFKEITQLSPLQYQKKLRLME
CCHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
ARRLIITNDSQISQIAMQVGYESPSQFSREYKRLFGNSPNSDLS
HCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]