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The map label for this gene is ybhD [H]

Identifier: 93006641

GI number: 93006641

Start: 2242901

End: 2243791

Strand: Direct

Name: ybhD [H]

Synonym: Pcryo_1817

Alternate gene names: 93006641

Gene position: 2242901-2243791 (Clockwise)

Preceding gene: 93006621

Following gene: 93006644

Centisome position: 73.3

GC content: 42.99

Gene sequence:

>891_bases
ATGAAACTACAACAGTTACGACATTTTTTGTTTGTGGTAGAAGAAGGGGGTTTTCGTGTGGCAGCCAACCGCGCCAATAG
AACACAGGCCGCATTATCCGCCTCTATAAAAGAGCTGGAAAAAACACTGGATCAGCGTTTATTCGAAAGTGGCAATAAAG
CAACACTGACACCGTTTGGAGAAAGTTGCTTGCCAAAGATTCAGCAGTTCATCAGTGTTTATCAAGCATTTGAGGAGGAC
TTAAGAGCGACCGCAGCAGGCGATAAAGGGAAGATAAGAATTGCTAGCGTACCATCACTGGTGACTAAGTTACTGCCTAG
CGTATTGGTCGCCTATTCAAAGAAATACCCTGATATTGAAATTGTTTTGATAGATGATAACGCGGTTGGCGTTGCAAACC
GGCTGCTCACGGGCGAAGTAGATTTGGCATTAGGTAATTGTACGAGTATCAATCAAACAGATATTGATTTTACCCCACTT
ATATCAGATCCTATCGGTGTGGTTTGTCTTAAAAGTAATGCGCTGAATCATGAATCGCGTCACTCTCAAGGGCTAAAATG
GCAACAACTCATGGCAGAGCCTTTTATTTATAATGGCACCTGTCGATTACTCGAGAACACACCCGCAGAAGTGCTCAATC
GCAAAGCTCGCTACACAGTAGAAAATATCACCTCACTGTTCTCATTGTTAAGAAACGATCTTGGTATCACCACTCTACCG
AAACTTGCCTTTCCTTCTAATGAGCCCGAGTTGGTTTGGATAAACTTACTTGACCCTTCTTTAAACAGACAAATCGGTAT
CTTTAAACTGGCTGACAAATCCATTTCCCCGCCCGCTCAAGCTTTTTATGAGCTCTGTGTGACCTATGTGCAAGAGCACT
ATCTATTATGA

Upstream 100 bases:

>100_bases
ACAAATCTAACTAATTAAATATTAAATATGATAGATTTAATCTATCGCTATAATAAATAGTATCTGATCAACGGCAGCAA
GCACAAAGGCACTAACGATT

Downstream 100 bases:

>100_bases
TGCATCCAATAATAAAGCCACTGATTGCGGTATTGTTGTCTTAATTAGTGAGTAGTGACAGACTGAATGAGTTATCAAAG
ACGAAGACTTATCATGAAAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MKLQQLRHFLFVVEEGGFRVAANRANRTQAALSASIKELEKTLDQRLFESGNKATLTPFGESCLPKIQQFISVYQAFEED
LRATAAGDKGKIRIASVPSLVTKLLPSVLVAYSKKYPDIEIVLIDDNAVGVANRLLTGEVDLALGNCTSINQTDIDFTPL
ISDPIGVVCLKSNALNHESRHSQGLKWQQLMAEPFIYNGTCRLLENTPAEVLNRKARYTVENITSLFSLLRNDLGITTLP
KLAFPSNEPELVWINLLDPSLNRQIGIFKLADKSISPPAQAFYELCVTYVQEHYLL

Sequences:

>Translated_296_residues
MKLQQLRHFLFVVEEGGFRVAANRANRTQAALSASIKELEKTLDQRLFESGNKATLTPFGESCLPKIQQFISVYQAFEED
LRATAAGDKGKIRIASVPSLVTKLLPSVLVAYSKKYPDIEIVLIDDNAVGVANRLLTGEVDLALGNCTSINQTDIDFTPL
ISDPIGVVCLKSNALNHESRHSQGLKWQQLMAEPFIYNGTCRLLENTPAEVLNRKARYTVENITSLFSLLRNDLGITTLP
KLAFPSNEPELVWINLLDPSLNRQIGIFKLADKSISPPAQAFYELCVTYVQEHYLL
>Mature_296_residues
MKLQQLRHFLFVVEEGGFRVAANRANRTQAALSASIKELEKTLDQRLFESGNKATLTPFGESCLPKIQQFISVYQAFEED
LRATAAGDKGKIRIASVPSLVTKLLPSVLVAYSKKYPDIEIVLIDDNAVGVANRLLTGEVDLALGNCTSINQTDIDFTPL
ISDPIGVVCLKSNALNHESRHSQGLKWQQLMAEPFIYNGTCRLLENTPAEVLNRKARYTVENITSLFSLLRNDLGITTLP
KLAFPSNEPELVWINLLDPSLNRQIGIFKLADKSISPPAQAFYELCVTYVQEHYLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=27.9863481228669, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=25.4295532646048, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=30.2325581395349, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082132, Length=308, Percent_Identity=25.3246753246753, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=21.7993079584775, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788887, Length=251, Percent_Identity=26.2948207171315, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32951; Mature: 32951

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQQLRHFLFVVEEGGFRVAANRANRTQAALSASIKELEKTLDQRLFESGNKATLTPFG
CCHHHHHHHHEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
ESCLPKIQQFISVYQAFEEDLRATAAGDKGKIRIASVPSLVTKLLPSVLVAYSKKYPDIE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEE
IVLIDDNAVGVANRLLTGEVDLALGNCTSINQTDIDFTPLISDPIGVVCLKSNALNHESR
EEEECCCCHHHHHHHEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH
HSQGLKWQQLMAEPFIYNGTCRLLENTPAEVLNRKARYTVENITSLFSLLRNDLGITTLP
HHCCCHHHHHHHCCCEECCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
KLAFPSNEPELVWINLLDPSLNRQIGIFKLADKSISPPAQAFYELCVTYVQEHYLL
CCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLQQLRHFLFVVEEGGFRVAANRANRTQAALSASIKELEKTLDQRLFESGNKATLTPFG
CCHHHHHHHHEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
ESCLPKIQQFISVYQAFEEDLRATAAGDKGKIRIASVPSLVTKLLPSVLVAYSKKYPDIE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCEE
IVLIDDNAVGVANRLLTGEVDLALGNCTSINQTDIDFTPLISDPIGVVCLKSNALNHESR
EEEECCCCHHHHHHHEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH
HSQGLKWQQLMAEPFIYNGTCRLLENTPAEVLNRKARYTVENITSLFSLLRNDLGITTLP
HHCCCHHHHHHHCCCEECCEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC
KLAFPSNEPELVWINLLDPSLNRQIGIFKLADKSISPPAQAFYELCVTYVQEHYLL
CCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]