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The map label for this gene is cydA [H]

Identifier: 93006518

GI number: 93006518

Start: 2093757

End: 2095250

Strand: Direct

Name: cydA [H]

Synonym: Pcryo_1694

Alternate gene names: 93006518

Gene position: 2093757-2095250 (Clockwise)

Preceding gene: 93006517

Following gene: 93006519

Centisome position: 68.43

GC content: 45.78

Gene sequence:

>1494_bases
ATGTTCGCTACATTTATGATTGACCAGCTTGATGCGCTGATGCTTGCGCGTATCCAGTTCGCATTTGTTATTTCATGGCA
CATTGTTTTTCCAGCTTTTTCAATCGGACTTGCCAGCTTCTTGACGGTTTTAGAGTTTCGCTGGTTAAAAACTGGTGAGC
CTATCTATGCCGAAGTCTACAAACACTGGGTAAAAATATTTGCCGTGGTATTCGGCATGGGTGTCGTGTCAGGCGTGGTA
ATGTCCTATCAATTCGGCACCAACTGGGCAGTGTTTTCCGATAAAGCGGGTAACGTGCTGGGTCCCTTGCTTGCTTATGA
AGTATTGACCGCCTTTTTTTTAGAAGCCTCATTCTTAGGGATTATGCTTTTTGGCTGGGGTCGTGTCAGTAAACGTATGC
ACCTTGCCTCAACGGCGATTGTCGCTATCGGTACGCTGATATCAGGGTTCTGGATTTTGGCTGCCAACAGCTTTATGCAG
ACGCCACAAGGCTTTATGGTTGGCGCAGATGGTCTACTGTATCCCACCAACTGGTTAGAAATCATTTTTAACCCCTCTTT
TCCCTATCGCTATGCGCATATGATGACCGCGGCTTTCTTGACGACTGCTTTTGTTATCGGTGGCATCGGTGCGTATTATC
TACAGTCCAAAAAACATGTCGAACATCGCAAACACGGTCGTGTCATGCTCGGTATGGCGATGGTGATGGCGATTTTTGTT
GCCCCAGCACAAGTACTTATTGGCGATATGCATGGGCTTAATACATTAGAGCATCAACCTGTCAAAGTCGCAGCGATGGA
AGGGCTTTGGGAAAATGAGCGCGGTGCGCCGCTGGTATTATTCGGCATTCCAGATCAAAAAGCAGAAAAAAATCACTATG
AAGTTAAAATACCTTATGTGTCCGGTTTAATTTTAACTCACTCATTTGATAAAGAAGTGAAGGGTCTTAAAAACTGGGCA
CCAGAAGATCGTCCATTCGTTCCCATTGTCTTTTGGGCGTTTCGTATCATGGTTTCTATTGGTATGCTGATGGTATTGGT
GGGACTATTTAGTCTATATAAATACTTTAAAAAACAGCAGTTTAATTCTGACAGTATCTGGTTCCACCGCTTATGGATGA
TGATGACCCCGATGGGTTTTATCGCCCTACTAGCTGGTTGGTTCGTCACTGAAACCGGACGTCAGCCGTGGACAGTTTAC
GGCGTCATTCGAACGGCAGAAAGCATGTCTCCGGTTGCGGCACAACAAGTGGCAACGACGCTGATTGGCTTTATCGTGCT
ATATGTCTTCGTATTTGGCGCAGGCAGCTTTTATATTTTACGCTTGATTGCAAAGGGTCCACAGCCGTATGAAGACCCTG
CTGATGATAACTTCTATGAGCACTCTATCACTGAAGGTCAAGGTCGCACGTTAAGCGGCGATAGCAATGCCAGTGAGAAA
GTAGAAGATTTGGATCAGCCTGCCGATGACGTCGAAGATGGAGGATTACGCTAA

Upstream 100 bases:

>100_bases
TTATCCTACTGACATCCGTATCGACGGACAGCTACGAACAATGATTTCAGCGTAACATGGAAGCAAGCGCTATTCAGCTA
AAATATAAGGGTAACCGCTT

Downstream 100 bases:

>100_bases
TGTTTAACTTTGGTGACGTATTAGATTTACCCCTCATCTGGGGCGGCTTAATTGCTTTAGCTGTCTTCGTTTATGTGTTA
CTTGATGGATTTGATTTGGG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MFATFMIDQLDALMLARIQFAFVISWHIVFPAFSIGLASFLTVLEFRWLKTGEPIYAEVYKHWVKIFAVVFGMGVVSGVV
MSYQFGTNWAVFSDKAGNVLGPLLAYEVLTAFFLEASFLGIMLFGWGRVSKRMHLASTAIVAIGTLISGFWILAANSFMQ
TPQGFMVGADGLLYPTNWLEIIFNPSFPYRYAHMMTAAFLTTAFVIGGIGAYYLQSKKHVEHRKHGRVMLGMAMVMAIFV
APAQVLIGDMHGLNTLEHQPVKVAAMEGLWENERGAPLVLFGIPDQKAEKNHYEVKIPYVSGLILTHSFDKEVKGLKNWA
PEDRPFVPIVFWAFRIMVSIGMLMVLVGLFSLYKYFKKQQFNSDSIWFHRLWMMMTPMGFIALLAGWFVTETGRQPWTVY
GVIRTAESMSPVAAQQVATTLIGFIVLYVFVFGAGSFYILRLIAKGPQPYEDPADDNFYEHSITEGQGRTLSGDSNASEK
VEDLDQPADDVEDGGLR

Sequences:

>Translated_497_residues
MFATFMIDQLDALMLARIQFAFVISWHIVFPAFSIGLASFLTVLEFRWLKTGEPIYAEVYKHWVKIFAVVFGMGVVSGVV
MSYQFGTNWAVFSDKAGNVLGPLLAYEVLTAFFLEASFLGIMLFGWGRVSKRMHLASTAIVAIGTLISGFWILAANSFMQ
TPQGFMVGADGLLYPTNWLEIIFNPSFPYRYAHMMTAAFLTTAFVIGGIGAYYLQSKKHVEHRKHGRVMLGMAMVMAIFV
APAQVLIGDMHGLNTLEHQPVKVAAMEGLWENERGAPLVLFGIPDQKAEKNHYEVKIPYVSGLILTHSFDKEVKGLKNWA
PEDRPFVPIVFWAFRIMVSIGMLMVLVGLFSLYKYFKKQQFNSDSIWFHRLWMMMTPMGFIALLAGWFVTETGRQPWTVY
GVIRTAESMSPVAAQQVATTLIGFIVLYVFVFGAGSFYILRLIAKGPQPYEDPADDNFYEHSITEGQGRTLSGDSNASEK
VEDLDQPADDVEDGGLR
>Mature_497_residues
MFATFMIDQLDALMLARIQFAFVISWHIVFPAFSIGLASFLTVLEFRWLKTGEPIYAEVYKHWVKIFAVVFGMGVVSGVV
MSYQFGTNWAVFSDKAGNVLGPLLAYEVLTAFFLEASFLGIMLFGWGRVSKRMHLASTAIVAIGTLISGFWILAANSFMQ
TPQGFMVGADGLLYPTNWLEIIFNPSFPYRYAHMMTAAFLTTAFVIGGIGAYYLQSKKHVEHRKHGRVMLGMAMVMAIFV
APAQVLIGDMHGLNTLEHQPVKVAAMEGLWENERGAPLVLFGIPDQKAEKNHYEVKIPYVSGLILTHSFDKEVKGLKNWA
PEDRPFVPIVFWAFRIMVSIGMLMVLVGLFSLYKYFKKQQFNSDSIWFHRLWMMMTPMGFIALLAGWFVTETGRQPWTVY
GVIRTAESMSPVAAQQVATTLIGFIVLYVFVFGAGSFYILRLIAKGPQPYEDPADDNFYEHSITEGQGRTLSGDSNASEK
VEDLDQPADDVEDGGLR

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=530, Percent_Identity=29.2452830188679, Blast_Score=234, Evalue=1e-62,
Organism=Escherichia coli, GI1787212, Length=317, Percent_Identity=37.2239747634069, Blast_Score=216, Evalue=3e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 55730; Mature: 55730

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]