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The map label for this gene is nifU [H]

Identifier: 93006481

GI number: 93006481

Start: 2041566

End: 2041952

Strand: Direct

Name: nifU [H]

Synonym: Pcryo_1657

Alternate gene names: 93006481

Gene position: 2041566-2041952 (Clockwise)

Preceding gene: 93006480

Following gene: 93006482

Centisome position: 66.72

GC content: 44.44

Gene sequence:

>387_bases
ATGGCCTATAGTGACCAAGTTATTGATCATTACGAAAATCCACGCAACGTTGGCAATCTTGATAAAAATGCCAAAAACGT
CGGCACTGGTATGGTCGGCGCACCAGCCTGTGGTGATGTTATGCGTTTACAAATCCAAGTCGATGATAACGGTATTATCG
AAGATGCACGCTTCAAAACTTACGGTTGTGGTTCAGCCATTGCGTCAAGCTCGCTCGTTACTGAGTGGCTAAAAGGCAAA
AGCTTGGATCAAGCTGGTGAAATTAAGAACAGTCACATTGCTGAAGAATTGGCATTGCCACCAGTAAAAGTGCATTGCTC
AGTCCTTGCAGAAGATGCAATTAAAGCGGCTATTAGCGACTATAAAGGCAAGCATGTTCCTGCCTGA

Upstream 100 bases:

>100_bases
TATACATTAAGTGTTTGACCCCAATTATCGATGAGCCAGTAACCCATTAACAACGACAGTCATTAAATGACAGCTCATCA
TCTAACCAGGAGAAAACCCC

Downstream 100 bases:

>100_bases
GCCCAGTCGTCGTTAAAATGACCAGCCATATTAAATAGTGTATAAGCTGTTTAATATATATTGTTTAGCAACTTGTTCTC
TGTATGAAAGCGCAAGCTGC

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAYSDQVIDHYENPRNVGNLDKNAKNVGTGMVGAPACGDVMRLQIQVDDNGIIEDARFKTYGCGSAIASSSLVTEWLKGK
SLDQAGEIKNSHIAEELALPPVKVHCSVLAEDAIKAAISDYKGKHVPA

Sequences:

>Translated_128_residues
MAYSDQVIDHYENPRNVGNLDKNAKNVGTGMVGAPACGDVMRLQIQVDDNGIIEDARFKTYGCGSAIASSSLVTEWLKGK
SLDQAGEIKNSHIAEELALPPVKVHCSVLAEDAIKAAISDYKGKHVPA
>Mature_127_residues
AYSDQVIDHYENPRNVGNLDKNAKNVGTGMVGAPACGDVMRLQIQVDDNGIIEDARFKTYGCGSAIASSSLVTEWLKGKS
LDQAGEIKNSHIAEELALPPVKVHCSVLAEDAIKAAISDYKGKHVPA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI24307953, Length=125, Percent_Identity=74.4, Blast_Score=202, Evalue=6e-53,
Organism=Homo sapiens, GI56699456, Length=125, Percent_Identity=73.6, Blast_Score=202, Evalue=6e-53,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=80.8, Blast_Score=217, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI17543474, Length=124, Percent_Identity=70.1612903225807, Blast_Score=192, Evalue=5e-50,
Organism=Saccharomyces cerevisiae, GI6324800, Length=127, Percent_Identity=69.2913385826772, Blast_Score=187, Evalue=5e-49,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=69.3548387096774, Blast_Score=186, Evalue=9e-49,
Organism=Drosophila melanogaster, GI21355597, Length=123, Percent_Identity=72.3577235772358, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13653; Mature: 13521

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSDQVIDHYENPRNVGNLDKNAKNVGTGMVGAPACGDVMRLQIQVDDNGIIEDARFKT
CCCCCHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWLKGKSLDQAGEIKNSHIAEELALPPVKVHCSVLAEDAIKAAISD
CCCCHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YKGKHVPA
CCCCCCCC
>Mature Secondary Structure 
AYSDQVIDHYENPRNVGNLDKNAKNVGTGMVGAPACGDVMRLQIQVDDNGIIEDARFKT
CCCCHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCCC
YGCGSAIASSSLVTEWLKGKSLDQAGEIKNSHIAEELALPPVKVHCSVLAEDAIKAAISD
CCCCHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YKGKHVPA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]