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The map label for this gene is oprF [H]

Identifier: 93005427

GI number: 93005427

Start: 711515

End: 712228

Strand: Direct

Name: oprF [H]

Synonym: Pcryo_0597

Alternate gene names: 93005427

Gene position: 711515-712228 (Clockwise)

Preceding gene: 93005426

Following gene: 93005431

Centisome position: 23.25

GC content: 37.11

Gene sequence:

>714_bases
ATGACCATTAAAACTCATAGCACTTTATTGTTATTAGCAGCATCTATAACATTAGCAGGCTGTCAAACTACCGAAATTGT
ACCGCCCAAAACTACACCGCAATATGAAAACATCAGGACGATGCAAGCAGAAATTGATTCAGATGGCGATGGCGTACTTG
ATGATATAGACGAGTGTCCTGAAACGCCACCTAACGTAGTGGTCGATGCTAAAGGCTGTCCAATAGAGGTTGATGTGGGC
GGACTTGAAATGGAATTCAATGGATTTTTTCCGCCAATGAGAAATCAATTACCCGATATCTATGATGCAGTATTTGTGAA
AGTAGCAGAAAATCTTAATGATTACCCAAAAGCCAATGTTTTTATTTTTGGTCATGTAGCAACAAATGAAATTGATAAAG
ATGCTTTAGCGACGCTTGGTTTCGATTCTTTATCACGCAATCGCGCCCTTAGCATCAAAAATACGTTAGTCTTGCAGCAT
CATATTGATGCTAAGCGTATCCGTACTTATGAGTGTTCAAATAAGATTCTAGTTACAGATACAGCGTTTATAGATCCAAG
TTTTGAAAAGCTTAATGTTAAAAATATTGAGTCAAAACAGCGCCGCGCCACTTTAATGGCGAGTAGTTTAGTCAATGATT
TAATGAATCTTAAATATAAATCTGATATTCAAAGATATGGTGAATACGCCAAGCATTGTAAGCCTTTTGAATAA

Upstream 100 bases:

>100_bases
TAAACGTTTATGCCCTTACTAGCAATATTGAGTGTTTTAAAAGAGTGAAAAGTGATGACAGACAAAGATTTAAATTATTC
TGGATAAAGAGAGGGTAATA

Downstream 100 bases:

>100_bases
TGGCAAATTTTGATAAACCGTCAAAATCTAACCTTACCCCAAAGACGAAAACAATACCATTAGCACGGGCGCGACAATAT
TAATAATAAAGCCAAAGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MTIKTHSTLLLLAASITLAGCQTTEIVPPKTTPQYENIRTMQAEIDSDGDGVLDDIDECPETPPNVVVDAKGCPIEVDVG
GLEMEFNGFFPPMRNQLPDIYDAVFVKVAENLNDYPKANVFIFGHVATNEIDKDALATLGFDSLSRNRALSIKNTLVLQH
HIDAKRIRTYECSNKILVTDTAFIDPSFEKLNVKNIESKQRRATLMASSLVNDLMNLKYKSDIQRYGEYAKHCKPFE

Sequences:

>Translated_237_residues
MTIKTHSTLLLLAASITLAGCQTTEIVPPKTTPQYENIRTMQAEIDSDGDGVLDDIDECPETPPNVVVDAKGCPIEVDVG
GLEMEFNGFFPPMRNQLPDIYDAVFVKVAENLNDYPKANVFIFGHVATNEIDKDALATLGFDSLSRNRALSIKNTLVLQH
HIDAKRIRTYECSNKILVTDTAFIDPSFEKLNVKNIESKQRRATLMASSLVNDLMNLKYKSDIQRYGEYAKHCKPFE
>Mature_236_residues
TIKTHSTLLLLAASITLAGCQTTEIVPPKTTPQYENIRTMQAEIDSDGDGVLDDIDECPETPPNVVVDAKGCPIEVDVGG
LEMEFNGFFPPMRNQLPDIYDAVFVKVAENLNDYPKANVFIFGHVATNEIDKDALATLGFDSLSRNRALSIKNTLVLQHH
IDAKRIRTYECSNKILVTDTAFIDPSFEKLNVKNIESKQRRATLMASSLVNDLMNLKYKSDIQRYGEYAKHCKPFE

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 26500; Mature: 26369

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKTHSTLLLLAASITLAGCQTTEIVPPKTTPQYENIRTMQAEIDSDGDGVLDDIDECP
CEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHCC
ETPPNVVVDAKGCPIEVDVGGLEMEFNGFFPPMRNQLPDIYDAVFVKVAENLNDYPKANV
CCCCCEEEECCCCEEEEECCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCE
FIFGHVATNEIDKDALATLGFDSLSRNRALSIKNTLVLQHHIDAKRIRTYECSNKILVTD
EEEEEEECCCCCHHHHHHCCCHHHCCCCEEEEHHEEEEEECCCHHHHEEEECCCEEEEEE
TAFIDPSFEKLNVKNIESKQRRATLMASSLVNDLMNLKYKSDIQRYGEYAKHCKPFE
EEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TIKTHSTLLLLAASITLAGCQTTEIVPPKTTPQYENIRTMQAEIDSDGDGVLDDIDECP
EECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHCC
ETPPNVVVDAKGCPIEVDVGGLEMEFNGFFPPMRNQLPDIYDAVFVKVAENLNDYPKANV
CCCCCEEEECCCCEEEEECCCEEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCE
FIFGHVATNEIDKDALATLGFDSLSRNRALSIKNTLVLQHHIDAKRIRTYECSNKILVTD
EEEEEEECCCCCHHHHHHCCCHHHCCCCEEEEHHEEEEEECCCHHHHEEEECCCEEEEEE
TAFIDPSFEKLNVKNIESKQRRATLMASSLVNDLMNLKYKSDIQRYGEYAKHCKPFE
EEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1898935 [H]