Click here to switch to the map view.

The map label for this gene is lemA [H]

Identifier: 93005283

GI number: 93005283

Start: 557459

End: 558091

Strand: Direct

Name: lemA [H]

Synonym: Pcryo_0453

Alternate gene names: 93005283

Gene position: 557459-558091 (Clockwise)

Preceding gene: 93005281

Following gene: 93005284

Centisome position: 18.22

GC content: 46.92

Gene sequence:

>633_bases
ATGACCCGTAAATCCATTGTAAAACCCATCTTGCTATCAGCTGTATTAGCCACATCTACTGTCGGCTTGACAGGTTGTGG
TTATAATAATCTTCAGGCTCAAGATGAGCAAGTGACGGCTTCGTGGTCAGAGGTGGTCAACCAATATCAACGTCGCTCGG
ATTTGGTGCCAAACTTGGTAAAAGTAGTACAGCAGTATGCTAAGCAAGAGCAGGAAGTCTTTACGCAAGTGGCTGAAGCC
CGCTCACGCGCTGGTGGTATCACCGTAACGCCAGAAGTACTCAATGATCCTGAAGCGATGGAGCGTTATGCGGCGGCGCA
AGAACAGATGACGGGTGCACTATCACGTTTGATGGCAGTGTCTGAGCGTTATCCTGAACTGAAATCTGATGCGCTATTCC
AAGATTTGCAAGCGCAATTAGAAGGTACTGAAAACCGTATCGCCGTCGCTCGTAACCGCTATATCCAAGAAGTACAGGGT
TACAATACGACCGTACGTCAATTCCCAACCAATATTACGGCAAAAGTATTTGGGATGAGTGCTAAACCAAACTTTAGCGT
CGCGAACGAAAAAGAGATTTCTACTGCACCAAGCGTGGATTTTGACAATGGCGAGTCAAAGACGTCTCAATAG

Upstream 100 bases:

>100_bases
AGTCATAGTATTGAAGTCAGTATCAAAAAAAGCAGTCAAAAGCCATTTTAAAATCTTGTTATCAGTTGTTTGATATTTAT
CATTATTAGGAGAATCCACA

Downstream 100 bases:

>100_bases
CAGCAAGTCAATAATGATGAATCATGCGTTTATTTCACGCGGGTATGCTTCATCTATTAAACGAATTGTGTAGCCGTCCT
AGCGTTTCTTACTGGTATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTRKSIVKPILLSAVLATSTVGLTGCGYNNLQAQDEQVTASWSEVVNQYQRRSDLVPNLVKVVQQYAKQEQEVFTQVAEA
RSRAGGITVTPEVLNDPEAMERYAAAQEQMTGALSRLMAVSERYPELKSDALFQDLQAQLEGTENRIAVARNRYIQEVQG
YNTTVRQFPTNITAKVFGMSAKPNFSVANEKEISTAPSVDFDNGESKTSQ

Sequences:

>Translated_210_residues
MTRKSIVKPILLSAVLATSTVGLTGCGYNNLQAQDEQVTASWSEVVNQYQRRSDLVPNLVKVVQQYAKQEQEVFTQVAEA
RSRAGGITVTPEVLNDPEAMERYAAAQEQMTGALSRLMAVSERYPELKSDALFQDLQAQLEGTENRIAVARNRYIQEVQG
YNTTVRQFPTNITAKVFGMSAKPNFSVANEKEISTAPSVDFDNGESKTSQ
>Mature_209_residues
TRKSIVKPILLSAVLATSTVGLTGCGYNNLQAQDEQVTASWSEVVNQYQRRSDLVPNLVKVVQQYAKQEQEVFTQVAEAR
SRAGGITVTPEVLNDPEAMERYAAAQEQMTGALSRLMAVSERYPELKSDALFQDLQAQLEGTENRIAVARNRYIQEVQGY
NTTVRQFPTNITAKVFGMSAKPNFSVANEKEISTAPSVDFDNGESKTSQ

Specific function: Unknown

COG id: COG1704

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LemA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007156 [H]

Pfam domain/function: PF04011 LemA [H]

EC number: NA

Molecular weight: Translated: 23201; Mature: 23070

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKSIVKPILLSAVLATSTVGLTGCGYNNLQAQDEQVTASWSEVVNQYQRRSDLVPNLV
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
KVVQQYAKQEQEVFTQVAEARSRAGGITVTPEVLNDPEAMERYAAAQEQMTGALSRLMAV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
SERYPELKSDALFQDLQAQLEGTENRIAVARNRYIQEVQGYNTTVRQFPTNITAKVFGMS
HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHEECC
AKPNFSVANEKEISTAPSVDFDNGESKTSQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRKSIVKPILLSAVLATSTVGLTGCGYNNLQAQDEQVTASWSEVVNQYQRRSDLVPNLV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
KVVQQYAKQEQEVFTQVAEARSRAGGITVTPEVLNDPEAMERYAAAQEQMTGALSRLMAV
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
SERYPELKSDALFQDLQAQLEGTENRIAVARNRYIQEVQGYNTTVRQFPTNITAKVFGMS
HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHEECC
AKPNFSVANEKEISTAPSVDFDNGESKTSQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11860552 [H]