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The map label for this gene is ygiD [H]

Identifier: 93005262

GI number: 93005262

Start: 529589

End: 530530

Strand: Reverse

Name: ygiD [H]

Synonym: Pcryo_0432

Alternate gene names: 93005262

Gene position: 530530-529589 (Counterclockwise)

Preceding gene: 93005263

Following gene: 93005259

Centisome position: 17.34

GC content: 48.73

Gene sequence:

>942_bases
ATGGACGCACGCCCTAATAAATGCCACATGAGACATCCTAAACCTGCAACACCCAATGCCCAAAGTATCAATCCGCAACG
CGATGATAATCGCGACGATTTGCATAGCCCACTAATATCGACGCCAATTACGGCGGCGGCGGCTTGGACAGATACGCCTA
TCATATCGAGCGCGGCAAAGCGCCCTAAGTTACCAGCGCTGTTTATATCGCATGGTGCACCGACGCTGGCTATCGAGCAA
TCTGCTACGACGAGCGCGCTAGCTCGTATAGGACAAAACTTACCCAAACCTCGTGCCATCGTCATTATGTCCGCGCATTG
GCAATCCGCGAAACTTGAGATCAGCAGCAATCCTGAGCCAAAAACGTGGCATGATTTTTCAGGTTTTACTCCAGAGCTAT
ATGAGCTGCAATATCCTGCTGCTGGTCATCCAGCACTTGCTGAGACCTTGGCGCAGCAACTGAGTGCCCGTGGTATTGTT
TGTAGGGTCAATCCTTTACGTGTCAGTGACCATGGGGTATGGGCGCCACTTTTACACCTGTATCCACAGGCTGATATTCC
TATCGTACAAGTATCCTTGCCACAGTATTATGACAGTATCGCCTGCTATCAATTGGGCGCGCAACTGGCACGGCTGCGTG
ATGAGCAAATTTTGATTATCGGTTCAGGGAATATCACCCACAATTTGCAAGCGCTACGCTGGCAAGCAGACAGTATTGAT
CAAACCGCAAAAGATTTTAAAGTTTGGCTACTACAACAGCTCAAAACCGACATCCCAAGCGCCCTAGACTGGCAGCAATA
TCCTGACTATAAAGATATCCATCCAAGTGATGAGCATTTACTGCCGCTATTTTTTGCCTTAGGTGCCGGTCAACGTGTCT
CAGTCGTGCATCAAAGTATGGCGCATCATAGCTTAGGCATGGATATCTATCGCTTTGATTAA

Upstream 100 bases:

>100_bases
TCAATCATAACCACCCTTATCACCGTGGTAATTAAAGTAGCAATAGAAAACTATCCCGTAGGAAAACATCATCAATCACA
GTGACACAACAGATTGAAAA

Downstream 100 bases:

>100_bases
AGGCTCTCAATCAAAGCGTCAGATATATGCAGGTATACCACACTACTTTTCAAAAGCAAGTTTGGTAAATAAACCTCCAC
GCTCCATTTCGCCTGCTACA

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDARPNKCHMRHPKPATPNAQSINPQRDDNRDDLHSPLISTPITAAAAWTDTPIISSAAKRPKLPALFISHGAPTLAIEQ
SATTSALARIGQNLPKPRAIVIMSAHWQSAKLEISSNPEPKTWHDFSGFTPELYELQYPAAGHPALAETLAQQLSARGIV
CRVNPLRVSDHGVWAPLLHLYPQADIPIVQVSLPQYYDSIACYQLGAQLARLRDEQILIIGSGNITHNLQALRWQADSID
QTAKDFKVWLLQQLKTDIPSALDWQQYPDYKDIHPSDEHLLPLFFALGAGQRVSVVHQSMAHHSLGMDIYRFD

Sequences:

>Translated_313_residues
MDARPNKCHMRHPKPATPNAQSINPQRDDNRDDLHSPLISTPITAAAAWTDTPIISSAAKRPKLPALFISHGAPTLAIEQ
SATTSALARIGQNLPKPRAIVIMSAHWQSAKLEISSNPEPKTWHDFSGFTPELYELQYPAAGHPALAETLAQQLSARGIV
CRVNPLRVSDHGVWAPLLHLYPQADIPIVQVSLPQYYDSIACYQLGAQLARLRDEQILIIGSGNITHNLQALRWQADSID
QTAKDFKVWLLQQLKTDIPSALDWQQYPDYKDIHPSDEHLLPLFFALGAGQRVSVVHQSMAHHSLGMDIYRFD
>Mature_313_residues
MDARPNKCHMRHPKPATPNAQSINPQRDDNRDDLHSPLISTPITAAAAWTDTPIISSAAKRPKLPALFISHGAPTLAIEQ
SATTSALARIGQNLPKPRAIVIMSAHWQSAKLEISSNPEPKTWHDFSGFTPELYELQYPAAGHPALAETLAQQLSARGIV
CRVNPLRVSDHGVWAPLLHLYPQADIPIVQVSLPQYYDSIACYQLGAQLARLRDEQILIIGSGNITHNLQALRWQADSID
QTAKDFKVWLLQQLKTDIPSALDWQQYPDYKDIHPSDEHLLPLFFALGAGQRVSVVHQSMAHHSLGMDIYRFD

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=257, Percent_Identity=35.7976653696498, Blast_Score=156, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 34818; Mature: 34818

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDARPNKCHMRHPKPATPNAQSINPQRDDNRDDLHSPLISTPITAAAAWTDTPIISSAAK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHCCCCHHHHCCCCCCHHHHHHC
RPKLPALFISHGAPTLAIEQSATTSALARIGQNLPKPRAIVIMSAHWQSAKLEISSNPEP
CCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCC
KTWHDFSGFTPELYELQYPAAGHPALAETLAQQLSARGIVCRVNPLRVSDHGVWAPLLHL
CCCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEECCCCHHHHHHHH
YPQADIPIVQVSLPQYYDSIACYQLGAQLARLRDEQILIIGSGNITHNLQALRWQADSID
CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEEECCHHHH
QTAKDFKVWLLQQLKTDIPSALDWQQYPDYKDIHPSDEHLLPLFFALGAGQRVSVVHQSM
HHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
AHHSLGMDIYRFD
HHHHCCCEEEECC
>Mature Secondary Structure
MDARPNKCHMRHPKPATPNAQSINPQRDDNRDDLHSPLISTPITAAAAWTDTPIISSAAK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHCCCCHHHHCCCCCCHHHHHHC
RPKLPALFISHGAPTLAIEQSATTSALARIGQNLPKPRAIVIMSAHWQSAKLEISSNPEP
CCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCC
KTWHDFSGFTPELYELQYPAAGHPALAETLAQQLSARGIVCRVNPLRVSDHGVWAPLLHL
CCCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEECCCCHHHHHHHH
YPQADIPIVQVSLPQYYDSIACYQLGAQLARLRDEQILIIGSGNITHNLQALRWQADSID
CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEEECCHHHH
QTAKDFKVWLLQQLKTDIPSALDWQQYPDYKDIHPSDEHLLPLFFALGAGQRVSVVHQSM
HHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH
AHHSLGMDIYRFD
HHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]