| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is relA [H]
Identifier: 93005207
GI number: 93005207
Start: 456501
End: 459041
Strand: Reverse
Name: relA [H]
Synonym: Pcryo_0377
Alternate gene names: 93005207
Gene position: 459041-456501 (Counterclockwise)
Preceding gene: 93005208
Following gene: 93005206
Centisome position: 15.0
GC content: 43.01
Gene sequence:
>2541_bases ATGGTAAAAATTCGTGAAGGATTACCGCTGGTAGATGGACAAACCACGCAAGCCGACAGTGCAACTTTGGCAGCGCAACT GGTCGCGAGTCAACGCTCGCACCAGTCTGCCAATAGCTATGCTCAAATCCCACTAGATATCAAGTATCAACTTGCCACTC ATAAACTCCATACTACCTTTGATCGCTCTGTTAATTACGCCTACTACAGTCATGACTCAAATCTTGAAAATGACTATTTA AGGGATAACATCCTTGATGAATCCGAGGCGTTTTCACAGCAAGAGCTTGAAGCGTTAGATTTAAATCAAATCAATATTGA TGTACCTACTTGGCTTGATAATGTTGCAAAGCGTATTGGGCAAGATTCAGTACCCAATCTTAGCGCTGCCTGTACATTCG TCCGTAATCACATGAATACCAGTGAATCGGAGCGTTCGGGCGCTTACGTGACTGGTATCGGCATGACTGATATCTTAACT TACCTTTATCAGGATGAAGATGCCCTTGTCGCTGCCATGCTCTATCGTAGTGCTCGCAAATCGATTATTAGTCTTAGTGA AATCGAAAAAAAGTTTGGCACCGATATCTCAACCTTGGTTAAAGATACCTTGGCGATGGGACAACTGTCTGAGATTATCG AAAGCAATAAGCGCTTAGAAGATCACTTCGTAAATAATCAGCGGGATCAATTATCAAATATTTATAGCATGCTGATCTCA GTCACCAACGATGTCCGAGTAGTACTGATTAAACTTGCTGAACGCACTTTTGCTATGCGCGAGCTGACCTTTTCCAATGA AGTTCGACAAGCTCGCGTGGCGCGTGAAGTCATGACTATTTATGCCCCATTGGCACATCGCTTGGGTATTGCCCAGCTGA AATGGGAGCTTGAAGATTTAGCCTTTCGCTACCTTGCCCCTGATCGTTATAAAGAAATTGCCAAACTATTATCAGAAAAG CGTAGCGAGCGTGAGTCTTATATCCAGCGTGTACAAGATAGACTGAACGAGTCTTTAGCAGAATCTGGTATTGAGGGCGA AGTTTCAGGACGCGTAAAGCACATTTATTCTATTTATCGAAAAATGAAGCTTAAAGGATTGTCTTTTGATCAGCTGTACG ATATCCGTGCGCTGCGAGTATTGGTGACCACTCCTTCAGACTGTTACCACGTGCTAGGATTGGTACACGGGTTATGGCGT TATATTCCTGAGCAATTTGACGATTATATTACCAATCCAAAATCTAACGGTTATCGCTCACTCCATACTGCGGTCATCGC TGAAAACAAATCGCTTGAAGTACAGATTCGTACTCAAGAGATGCACTTTGAAGCTGAGCTTGGCATGTGTGCCCATGTCA ACTACAAAGAAGGGCTCAAAAACAAAAAGGACAATTACCTTAATCAGCGAATCAGTTCTTTACGTCAACTGCTGTCTATC AATAATCAGCCGCGCTCATCTTTATCAACTGGTGATGAATTAGAGGAAGTTGAATATGATGATGAAGAGCAATTGGTTGA TTTTGATGAACTCGAACGCATTTACATATTTAGTCGTGATGGCGATATTACGGAGTTGCCAAAAGGCGCGACTGTGCTGG ATTTTGCCTATTATGTTCATACGCAGGTCGGTAACCGCGCCCAAGCAGCGCGTGTCAATCAGCGTTATGTACCATTAACT TATCAGCTCAAAACGGGCGAGCAAGTTGAGATTATTACCAAATCTTCACGTGAGCCCAATCGCGACTGGCTAGTGGCTTC ACTAGGCTATATTCATACCAATCGTGCCCGCTCAAAACTGCGTCAATGGTTTAACAAACAAGATCGTGATAAGAATATCG AAATCGGGCGTCAGATGCTCAGTAAAGAGCTTGAACGTCTATCGGTGCATCCGAATAGCATCGATTTAAACGATTATACG CAACATTTTAATGTCAACAATACCGACGATATTGTGGTTGGTTTGGTGACGGGTGAAATTGGTCTAAATCAGCTTACCAG TCATATCTCTCGTCAGCTGCATTTAGAGCCTGAAAGATCTGAAGAAGATTTTGCCCCTATTATCGATAAAAGAGATTCAG GTAAGCTTGATGCTTACAAAATCCAAATCGATGGCTTAGATAACATTGAAGTTGGTTTGGCAGGCTGCTGTCACCCTGTG CACGGTGAGCCTATCGCGGGCTACATTACTTTATCGCGCGGTGTCAGTGTTCACAATCGTGGTTGCCCTGAATATCTGCG CCTGATTGAACGTGATCCTGAACGCGAAATCAAGGCTGCTTGGAAGATTAAATCTGGTCGCTATCAGCCAGTTGATATTC ATATAGAAGCTTATGATAGACGTGGTTTATTGCGCGATTTAACCCAAATCATTGATAAAGAAAACGTCAATATTCGTCAA GTTCAAACCCTGAGCAATGATGATAATATTGCCTTTTTAAAGTTTCATATTGAAGTGTCGGGGCTAGCACATTTATCCAA GTTACTTGCTAAGCTTGAACAACAGCATGGTATCTTACATGCTCGCCGCGCTGTTGCCTGA
Upstream 100 bases:
>100_bases TTGATTTATAACTGACCATTTATCGATAGCAAGCTCATGTTTAGCTCTAGCATTGTAGATGGCGTTATTATCAAGTCAAA ATAGCTAAGAGGAGTGGGCA
Downstream 100 bases:
>100_bases TAATACCTTTAATTCTTAATAGAGATTTTATAAAATACTATGCCTGAGTTACCAGAAGTAGAAACGACAAAAACCAGTCT GACGCCTTTATTAGGACAAA
Product: (p)ppGpp synthetase SpoT/RelA
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase; ppGpp synthase I [H]
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MVKIREGLPLVDGQTTQADSATLAAQLVASQRSHQSANSYAQIPLDIKYQLATHKLHTTFDRSVNYAYYSHDSNLENDYL RDNILDESEAFSQQELEALDLNQINIDVPTWLDNVAKRIGQDSVPNLSAACTFVRNHMNTSESERSGAYVTGIGMTDILT YLYQDEDALVAAMLYRSARKSIISLSEIEKKFGTDISTLVKDTLAMGQLSEIIESNKRLEDHFVNNQRDQLSNIYSMLIS VTNDVRVVLIKLAERTFAMRELTFSNEVRQARVAREVMTIYAPLAHRLGIAQLKWELEDLAFRYLAPDRYKEIAKLLSEK RSERESYIQRVQDRLNESLAESGIEGEVSGRVKHIYSIYRKMKLKGLSFDQLYDIRALRVLVTTPSDCYHVLGLVHGLWR YIPEQFDDYITNPKSNGYRSLHTAVIAENKSLEVQIRTQEMHFEAELGMCAHVNYKEGLKNKKDNYLNQRISSLRQLLSI NNQPRSSLSTGDELEEVEYDDEEQLVDFDELERIYIFSRDGDITELPKGATVLDFAYYVHTQVGNRAQAARVNQRYVPLT YQLKTGEQVEIITKSSREPNRDWLVASLGYIHTNRARSKLRQWFNKQDRDKNIEIGRQMLSKELERLSVHPNSIDLNDYT QHFNVNNTDDIVVGLVTGEIGLNQLTSHISRQLHLEPERSEEDFAPIIDKRDSGKLDAYKIQIDGLDNIEVGLAGCCHPV HGEPIAGYITLSRGVSVHNRGCPEYLRLIERDPEREIKAAWKIKSGRYQPVDIHIEAYDRRGLLRDLTQIIDKENVNIRQ VQTLSNDDNIAFLKFHIEVSGLAHLSKLLAKLEQQHGILHARRAVA
Sequences:
>Translated_846_residues MVKIREGLPLVDGQTTQADSATLAAQLVASQRSHQSANSYAQIPLDIKYQLATHKLHTTFDRSVNYAYYSHDSNLENDYL RDNILDESEAFSQQELEALDLNQINIDVPTWLDNVAKRIGQDSVPNLSAACTFVRNHMNTSESERSGAYVTGIGMTDILT YLYQDEDALVAAMLYRSARKSIISLSEIEKKFGTDISTLVKDTLAMGQLSEIIESNKRLEDHFVNNQRDQLSNIYSMLIS VTNDVRVVLIKLAERTFAMRELTFSNEVRQARVAREVMTIYAPLAHRLGIAQLKWELEDLAFRYLAPDRYKEIAKLLSEK RSERESYIQRVQDRLNESLAESGIEGEVSGRVKHIYSIYRKMKLKGLSFDQLYDIRALRVLVTTPSDCYHVLGLVHGLWR YIPEQFDDYITNPKSNGYRSLHTAVIAENKSLEVQIRTQEMHFEAELGMCAHVNYKEGLKNKKDNYLNQRISSLRQLLSI NNQPRSSLSTGDELEEVEYDDEEQLVDFDELERIYIFSRDGDITELPKGATVLDFAYYVHTQVGNRAQAARVNQRYVPLT YQLKTGEQVEIITKSSREPNRDWLVASLGYIHTNRARSKLRQWFNKQDRDKNIEIGRQMLSKELERLSVHPNSIDLNDYT QHFNVNNTDDIVVGLVTGEIGLNQLTSHISRQLHLEPERSEEDFAPIIDKRDSGKLDAYKIQIDGLDNIEVGLAGCCHPV HGEPIAGYITLSRGVSVHNRGCPEYLRLIERDPEREIKAAWKIKSGRYQPVDIHIEAYDRRGLLRDLTQIIDKENVNIRQ VQTLSNDDNIAFLKFHIEVSGLAHLSKLLAKLEQQHGILHARRAVA >Mature_846_residues MVKIREGLPLVDGQTTQADSATLAAQLVASQRSHQSANSYAQIPLDIKYQLATHKLHTTFDRSVNYAYYSHDSNLENDYL RDNILDESEAFSQQELEALDLNQINIDVPTWLDNVAKRIGQDSVPNLSAACTFVRNHMNTSESERSGAYVTGIGMTDILT YLYQDEDALVAAMLYRSARKSIISLSEIEKKFGTDISTLVKDTLAMGQLSEIIESNKRLEDHFVNNQRDQLSNIYSMLIS VTNDVRVVLIKLAERTFAMRELTFSNEVRQARVAREVMTIYAPLAHRLGIAQLKWELEDLAFRYLAPDRYKEIAKLLSEK RSERESYIQRVQDRLNESLAESGIEGEVSGRVKHIYSIYRKMKLKGLSFDQLYDIRALRVLVTTPSDCYHVLGLVHGLWR YIPEQFDDYITNPKSNGYRSLHTAVIAENKSLEVQIRTQEMHFEAELGMCAHVNYKEGLKNKKDNYLNQRISSLRQLLSI NNQPRSSLSTGDELEEVEYDDEEQLVDFDELERIYIFSRDGDITELPKGATVLDFAYYVHTQVGNRAQAARVNQRYVPLT YQLKTGEQVEIITKSSREPNRDWLVASLGYIHTNRARSKLRQWFNKQDRDKNIEIGRQMLSKELERLSVHPNSIDLNDYT QHFNVNNTDDIVVGLVTGEIGLNQLTSHISRQLHLEPERSEEDFAPIIDKRDSGKLDAYKIQIDGLDNIEVGLAGCCHPV HGEPIAGYITLSRGVSVHNRGCPEYLRLIERDPEREIKAAWKIKSGRYQPVDIHIEAYDRRGLLRDLTQIIDKENVNIRQ VQTLSNDDNIAFLKFHIEVSGLAHLSKLLAKLEQQHGILHARRAVA
Specific function: In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which i
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Escherichia coli, GI1789147, Length=713, Percent_Identity=39.4109396914446, Blast_Score=510, Evalue=1e-145, Organism=Escherichia coli, GI1790082, Length=725, Percent_Identity=31.448275862069, Blast_Score=359, Evalue=1e-100,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 96884; Mature: 96884
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKIREGLPLVDGQTTQADSATLAAQLVASQRSHQSANSYAQIPLDIKYQLATHKLHTTF CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCEEEEEEEHHHHHHHHH DRSVNYAYYSHDSNLENDYLRDNILDESEAFSQQELEALDLNQINIDVPTWLDNVAKRIG HCCCCEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC QDSVPNLSAACTFVRNHMNTSESERSGAYVTGIGMTDILTYLYQDEDALVAAMLYRSARK CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHH SIISLSEIEKKFGTDISTLVKDTLAMGQLSEIIESNKRLEDHFVNNQRDQLSNIYSMLIS HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHH VTNDVRVVLIKLAERTFAMRELTFSNEVRQARVAREVMTIYAPLAHRLGIAQLKWELEDL HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH AFRYLAPDRYKEIAKLLSEKRSERESYIQRVQDRLNESLAESGIEGEVSGRVKHIYSIYR HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH KMKLKGLSFDQLYDIRALRVLVTTPSDCYHVLGLVHGLWRYIPEQFDDYITNPKSNGYRS HHHHCCCCHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH LHTAVIAENKSLEVQIRTQEMHFEAELGMCAHVNYKEGLKNKKDNYLNQRISSLRQLLSI HHHHEEECCCCEEEEEEEHHHEEHHHCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHHHC NNQPRSSLSTGDELEEVEYDDEEQLVDFDELERIYIFSRDGDITELPKGATVLDFAYYVH CCCCCCCCCCCCHHHHCCCCCHHHCCCHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHH TQVGNRAQAARVNQRYVPLTYQLKTGEQVEIITKSSREPNRDWLVASLGYIHTNRARSKL HHCCCCHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHH RQWFNKQDRDKNIEIGRQMLSKELERLSVHPNSIDLNDYTQHFNVNNTDDIVVGLVTGEI HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCC GLNQLTSHISRQLHLEPERSEEDFAPIIDKRDSGKLDAYKIQIDGLDNIEVGLAGCCHPV CHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCHHHHHCCCCC HGEPIAGYITLSRGVSVHNRGCPEYLRLIERDPEREIKAAWKIKSGRYQPVDIHIEAYDR CCCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHEEECCCCCCEEEEEEEECCC RGLLRDLTQIIDKENVNIRQVQTLSNDDNIAFLKFHIEVSGLAHLSKLLAKLEQQHGILH CCHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHCCHHH ARRAVA HHHHCC >Mature Secondary Structure MVKIREGLPLVDGQTTQADSATLAAQLVASQRSHQSANSYAQIPLDIKYQLATHKLHTTF CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCEEEEEEEHHHHHHHHH DRSVNYAYYSHDSNLENDYLRDNILDESEAFSQQELEALDLNQINIDVPTWLDNVAKRIG HCCCCEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC QDSVPNLSAACTFVRNHMNTSESERSGAYVTGIGMTDILTYLYQDEDALVAAMLYRSARK CCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHH SIISLSEIEKKFGTDISTLVKDTLAMGQLSEIIESNKRLEDHFVNNQRDQLSNIYSMLIS HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHH VTNDVRVVLIKLAERTFAMRELTFSNEVRQARVAREVMTIYAPLAHRLGIAQLKWELEDL HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH AFRYLAPDRYKEIAKLLSEKRSERESYIQRVQDRLNESLAESGIEGEVSGRVKHIYSIYR HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH KMKLKGLSFDQLYDIRALRVLVTTPSDCYHVLGLVHGLWRYIPEQFDDYITNPKSNGYRS HHHHCCCCHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH LHTAVIAENKSLEVQIRTQEMHFEAELGMCAHVNYKEGLKNKKDNYLNQRISSLRQLLSI HHHHEEECCCCEEEEEEEHHHEEHHHCCCEEECCHHHHCCCCHHHHHHHHHHHHHHHHHC NNQPRSSLSTGDELEEVEYDDEEQLVDFDELERIYIFSRDGDITELPKGATVLDFAYYVH CCCCCCCCCCCCHHHHCCCCCHHHCCCHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHH TQVGNRAQAARVNQRYVPLTYQLKTGEQVEIITKSSREPNRDWLVASLGYIHTNRARSKL HHCCCCHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHH RQWFNKQDRDKNIEIGRQMLSKELERLSVHPNSIDLNDYTQHFNVNNTDDIVVGLVTGEI HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCC GLNQLTSHISRQLHLEPERSEEDFAPIIDKRDSGKLDAYKIQIDGLDNIEVGLAGCCHPV CHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCHHHHHCCCCC HGEPIAGYITLSRGVSVHNRGCPEYLRLIERDPEREIKAAWKIKSGRYQPVDIHIEAYDR CCCCEEEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHEEECCCCCCEEEEEEEECCC RGLLRDLTQIIDKENVNIRQVQTLSNDDNIAFLKFHIEVSGLAHLSKLLAKLEQQHGILH CCHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHCCHHH ARRAVA HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]