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The map label for this gene is comF [H]

Identifier: 93005092

GI number: 93005092

Start: 310581

End: 311105

Strand: Direct

Name: comF [H]

Synonym: Pcryo_0261

Alternate gene names: 93005092

Gene position: 310581-311105 (Clockwise)

Preceding gene: 93005091

Following gene: 93005093

Centisome position: 10.15

GC content: 44.19

Gene sequence:

>525_bases
ATGACGCTCGCCATTCAAGCAGCAACTTACTATGACTATCCCATGCGCCAAGCTATTAGAGCCTTCAAGCATCATGAGGA
TATGACAAAGCTGCCGTTATTGTTACATGTGATACGTCAACTACCACGACCTCATGGTTGCCATCATGATAATAGTGTGA
TTGTCGCTATGCCAACGACCGATGTGCGTCTCATTAAACGTGGCTTTGATCCTGTCAGTATTTTGGCCGCGCATTTATCT
AAGCATTGGGACATTCCTTTATGGCAAGGTATCAAGCGTATTGATAATACGGTCAGTCAGCAAGGACTCACCCGTGCCGA
ACGCTTGAGCAATCTAGACAATGCCTTTACTTTACTAGAGCCTTCTCCCGTTAAACGCCTTATCTTATTTGATGATGTGG
CAACTACGGGAGCAAGTTTACAAGCCTTAGCTCGCATTCTATCAATTTACCCTTCAACAACTCCTAACTCCAATAATAAA
TACTATCTGTGTGCCTATGCATTAGCGCATGGTAGCCAGTCATAG

Upstream 100 bases:

>100_bases
GCAACTCTATAGCCGTTTTAGTAATGGACTATTATGCGCCAGCTGCCATAGCAGTATTGCGTGGTTGCCCAAGCCATTTG
AAGTCGATATTACTGCTGGC

Downstream 100 bases:

>100_bases
ATGCTAATAAAACTTGTTGGCAACTACTATTATGTTGCTATTATGTTGCTAATATTTTAATCCCACGCTATATTGACAAT
AACATAGACTATAAACATAT

Product: putative competence protein F

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MTLAIQAATYYDYPMRQAIRAFKHHEDMTKLPLLLHVIRQLPRPHGCHHDNSVIVAMPTTDVRLIKRGFDPVSILAAHLS
KHWDIPLWQGIKRIDNTVSQQGLTRAERLSNLDNAFTLLEPSPVKRLILFDDVATTGASLQALARILSIYPSTTPNSNNK
YYLCAYALAHGSQS

Sequences:

>Translated_174_residues
MTLAIQAATYYDYPMRQAIRAFKHHEDMTKLPLLLHVIRQLPRPHGCHHDNSVIVAMPTTDVRLIKRGFDPVSILAAHLS
KHWDIPLWQGIKRIDNTVSQQGLTRAERLSNLDNAFTLLEPSPVKRLILFDDVATTGASLQALARILSIYPSTTPNSNNK
YYLCAYALAHGSQS
>Mature_173_residues
TLAIQAATYYDYPMRQAIRAFKHHEDMTKLPLLLHVIRQLPRPHGCHHDNSVIVAMPTTDVRLIKRGFDPVSILAAHLSK
HWDIPLWQGIKRIDNTVSQQGLTRAERLSNLDNAFTLLEPSPVKRLILFDDVATTGASLQALARILSIYPSTTPNSNNKY
YLCAYALAHGSQS

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 19582; Mature: 19451

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAIQAATYYDYPMRQAIRAFKHHEDMTKLPLLLHVIRQLPRPHGCHHDNSVIVAMPTT
CEEEEEEHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
DVRLIKRGFDPVSILAAHLSKHWDIPLWQGIKRIDNTVSQQGLTRAERLSNLDNAFTLLE
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
PSPVKRLILFDDVATTGASLQALARILSIYPSTTPNSNNKYYLCAYALAHGSQS
CCCHHEEEEECCHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure 
TLAIQAATYYDYPMRQAIRAFKHHEDMTKLPLLLHVIRQLPRPHGCHHDNSVIVAMPTT
EEEEEEHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
DVRLIKRGFDPVSILAAHLSKHWDIPLWQGIKRIDNTVSQQGLTRAERLSNLDNAFTLLE
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
PSPVKRLILFDDVATTGASLQALARILSIYPSTTPNSNNKYYLCAYALAHGSQS
CCCHHEEEEECCHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]