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The map label for this gene is ybaK [H]

Identifier: 93004977

GI number: 93004977

Start: 173355

End: 173843

Strand: Direct

Name: ybaK [H]

Synonym: Pcryo_0146

Alternate gene names: 93004977

Gene position: 173355-173843 (Clockwise)

Preceding gene: 93004975

Following gene: 93004978

Centisome position: 5.67

GC content: 45.19

Gene sequence:

>489_bases
ATGACGCCAGCTATCAATCTCGCCAAACAACGTGGTCTTGATTATCGATTACATGAATATATTCATGACAGTAACGCTGC
CTCTTTTGGGTTAGAAGCGGCCGAAAAGCTGGGTGTTGACGTGACACAGGTTTTTAAAACCTTGGTCGTATTGACCGATA
CAGATGTGCTCGCTGTTGCTATCTTGCCAGTGGATAAAACCTTAAACTTTAAAAAAATGGCTAAGGCGCTATCTGTTAAT
AAAATGCTGGCCTGCAAAAAAGTCCAAATGGCAGATCCTAAACAGGTCGAGCGTAGTACCGGCTATGTATTAGGCGGTGT
CAGTCCATTGGGACAAAAAAAACGCTTGCCAACTGTTATAGATGAGTCAGCGCAAACACATTCAACCATCTATGTGAGCG
GTGGTCGCCGTGGTCTAGAGATTGAACTGCCGCCAGCACAATTAGCGACGACACTTACGGCTCGCTTTGCCTCTATTACC
GATGATTGA

Upstream 100 bases:

>100_bases
TTGAAAAGTAAAGTATTTAGGGTAAAAATAGTTTTGTACAAGATATACTATATTGTATTTCTGCTTACTCATTAACGTCA
CTTAATTCAGTGAGAATATT

Downstream 100 bases:

>100_bases
AAACGGCTGATTGTCAGATACATTAGCTTTGCGAAGCTATTCACTTTTCGTTTTTTACCCGTATTGTATAAGGATATAAT
CATGCCGCATTTAACCATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MTPAINLAKQRGLDYRLHEYIHDSNAASFGLEAAEKLGVDVTQVFKTLVVLTDTDVLAVAILPVDKTLNFKKMAKALSVN
KMLACKKVQMADPKQVERSTGYVLGGVSPLGQKKRLPTVIDESAQTHSTIYVSGGRRGLEIELPPAQLATTLTARFASIT
DD

Sequences:

>Translated_162_residues
MTPAINLAKQRGLDYRLHEYIHDSNAASFGLEAAEKLGVDVTQVFKTLVVLTDTDVLAVAILPVDKTLNFKKMAKALSVN
KMLACKKVQMADPKQVERSTGYVLGGVSPLGQKKRLPTVIDESAQTHSTIYVSGGRRGLEIELPPAQLATTLTARFASIT
DD
>Mature_161_residues
TPAINLAKQRGLDYRLHEYIHDSNAASFGLEAAEKLGVDVTQVFKTLVVLTDTDVLAVAILPVDKTLNFKKMAKALSVNK
MLACKKVQMADPKQVERSTGYVLGGVSPLGQKKRLPTVIDESAQTHSTIYVSGGRRGLEIELPPAQLATTLTARFASITD
D

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=161, Percent_Identity=52.1739130434783, Blast_Score=162, Evalue=8e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17554; Mature: 17422

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAINLAKQRGLDYRLHEYIHDSNAASFGLEAAEKLGVDVTQVFKTLVVLTDTDVLAVA
CCCCCHHHHHCCCCHHHHHHHHCCCCCHHCHHHHHHHCCCHHHHHHHHHHHCCCCEEEEE
ILPVDKTLNFKKMAKALSVNKMLACKKVQMADPKQVERSTGYVLGGVSPLGQKKRLPTVI
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEEECCCCCCCCCCCCHHH
DESAQTHSTIYVSGGRRGLEIELPPAQLATTLTARFASITDD
CCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TPAINLAKQRGLDYRLHEYIHDSNAASFGLEAAEKLGVDVTQVFKTLVVLTDTDVLAVA
CCCCHHHHHCCCCHHHHHHHHCCCCCHHCHHHHHHHCCCHHHHHHHHHHHCCCCEEEEE
ILPVDKTLNFKKMAKALSVNKMLACKKVQMADPKQVERSTGYVLGGVSPLGQKKRLPTVI
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCEEEECCCCCCCCCCCCHHH
DESAQTHSTIYVSGGRRGLEIELPPAQLATTLTARFASITDD
CCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]