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The map label for this gene is dapB [H]

Identifier: 93004866

GI number: 93004866

Start: 42253

End: 43083

Strand: Direct

Name: dapB [H]

Synonym: Pcryo_0035

Alternate gene names: 93004866

Gene position: 42253-43083 (Clockwise)

Preceding gene: 93004865

Following gene: 93004867

Centisome position: 1.38

GC content: 45.61

Gene sequence:

>831_bases
ATGAGTCAGCCAGAGAATAAAAAAATGATTAATGTCGGTGTCATCGGTGCAGGTGGTCGGATGGGACGTATGCTTATCGA
AGCGATACAAGACAATCCACAAACGACATTAATTGCAGCGATTGAGCGTCAAGGCTCAAGTTTGGTTGGAGCAGATGCGG
GTGAAGTTGCTGCGGTCGGTCGATTGAATGTGCAAATAGTTGATGATTTACAGTCAGTGATTAATAAGATTGATGTATTG
ATTGACTTTAGCTTACCTGCTGCTACTGAACAAAACATGCAAGTCTGTGCTGAGCACAACGTCGCTATGGTTATCGGCAC
GACAGGATTTAATGAGCAGCAAGAGCAAGTATTGGCAAAAGCGAGTGAGCAAGTTGCTATCGTTTATGCGGGTAACTATT
CAACAGGTGTTAATCTTTCATTAAAGCTATTAGGTATGGCTGCTAAAGCTTTTGGCACTGATGCTGATGTAGAGGTCATT
GAGGCGCATCATAAGCATAAAATCGATGCGCCATCAGGTACTGCTTACATGATGGCAGAAGCTGTGGCAGAAGCACGTGG
ACAGAATCTAAAAGACGTCGCTGTCTATGGTCGTGAAGGACAAACTGGCGAGCGCGAAGCAGGTACGATTGGTATTCATG
CGATACGTGGCGGTGAAATCATCGGCGATCATACTGTGATGTTTATTGCGGATGGTGAAGTTGTTGAAATTACCCATCGC
GCGCGCGCAAGAATGACTTTTGCTGCTGGCGCTGTGCGTGCCGCTACGTGGATTGTTCAGCAGTCGGCTGGACAATATAA
TATGCAGGATGTCTTAGGTTTAAATGACTAG

Upstream 100 bases:

>100_bases
TTGGTGCTATAAAAAACCATTCACAAGCTGATATTTGCTAAACTTAGCCTAATAAATTTAAAAACCAGCGTATTAAAAAT
AAAGTACTTAGGATAATTAT

Downstream 100 bases:

>100_bases
GCTTTAACGAACAAGGTTTGAATTATTAAGGTTTTTTCTTATGGTTTGGTAGCTGCTGAGTATGGCTTTTGATAGCGTTT
AACTATTGCTAGAGGTCAAT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSQPENKKMINVGVIGAGGRMGRMLIEAIQDNPQTTLIAAIERQGSSLVGADAGEVAAVGRLNVQIVDDLQSVINKIDVL
IDFSLPAATEQNMQVCAEHNVAMVIGTTGFNEQQEQVLAKASEQVAIVYAGNYSTGVNLSLKLLGMAAKAFGTDADVEVI
EAHHKHKIDAPSGTAYMMAEAVAEARGQNLKDVAVYGREGQTGEREAGTIGIHAIRGGEIIGDHTVMFIADGEVVEITHR
ARARMTFAAGAVRAATWIVQQSAGQYNMQDVLGLND

Sequences:

>Translated_276_residues
MSQPENKKMINVGVIGAGGRMGRMLIEAIQDNPQTTLIAAIERQGSSLVGADAGEVAAVGRLNVQIVDDLQSVINKIDVL
IDFSLPAATEQNMQVCAEHNVAMVIGTTGFNEQQEQVLAKASEQVAIVYAGNYSTGVNLSLKLLGMAAKAFGTDADVEVI
EAHHKHKIDAPSGTAYMMAEAVAEARGQNLKDVAVYGREGQTGEREAGTIGIHAIRGGEIIGDHTVMFIADGEVVEITHR
ARARMTFAAGAVRAATWIVQQSAGQYNMQDVLGLND
>Mature_275_residues
SQPENKKMINVGVIGAGGRMGRMLIEAIQDNPQTTLIAAIERQGSSLVGADAGEVAAVGRLNVQIVDDLQSVINKIDVLI
DFSLPAATEQNMQVCAEHNVAMVIGTTGFNEQQEQVLAKASEQVAIVYAGNYSTGVNLSLKLLGMAAKAFGTDADVEVIE
AHHKHKIDAPSGTAYMMAEAVAEARGQNLKDVAVYGREGQTGEREAGTIGIHAIRGGEIIGDHTVMFIADGEVVEITHRA
RARMTFAAGAVRAATWIVQQSAGQYNMQDVLGLND

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=267, Percent_Identity=52.4344569288389, Blast_Score=275, Evalue=3e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29241; Mature: 29109

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPENKKMINVGVIGAGGRMGRMLIEAIQDNPQTTLIAAIERQGSSLVGADAGEVAAVG
CCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCCCEEEEE
RLNVQIVDDLQSVINKIDVLIDFSLPAATEQNMQVCAEHNVAMVIGTTGFNEQQEQVLAK
EEEEEEHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHCCCEEEEEEECCCCHHHHHHHHH
ASEQVAIVYAGNYSTGVNLSLKLLGMAAKAFGTDADVEVIEAHHKHKIDAPSGTAYMMAE
CCCCEEEEEECCCCCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH
AVAEARGQNLKDVAVYGREGQTGEREAGTIGIHAIRGGEIIGDHTVMFIADGEVVEITHR
HHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCEEECCCEEEEEECCCEEEEEHH
ARARMTFAAGAVRAATWIVQQSAGQYNMQDVLGLND
HHHEEEHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC
>Mature Secondary Structure 
SQPENKKMINVGVIGAGGRMGRMLIEAIQDNPQTTLIAAIERQGSSLVGADAGEVAAVG
CCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCCCEEEEE
RLNVQIVDDLQSVINKIDVLIDFSLPAATEQNMQVCAEHNVAMVIGTTGFNEQQEQVLAK
EEEEEEHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHCCCEEEEEEECCCCHHHHHHHHH
ASEQVAIVYAGNYSTGVNLSLKLLGMAAKAFGTDADVEVIEAHHKHKIDAPSGTAYMMAE
CCCCEEEEEECCCCCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH
AVAEARGQNLKDVAVYGREGQTGEREAGTIGIHAIRGGEIIGDHTVMFIADGEVVEITHR
HHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCEEECCCEEEEEECCCEEEEEHH
ARARMTFAAGAVRAATWIVQQSAGQYNMQDVLGLND
HHHEEEHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA