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The map label for this gene is 92114028

Identifier: 92114028

GI number: 92114028

Start: 2165727

End: 2166665

Strand: Direct

Name: 92114028

Synonym: Csal_1905

Alternate gene names: NA

Gene position: 2165727-2166665 (Clockwise)

Preceding gene: 92114023

Following gene: 92114029

Centisome position: 58.59

GC content: 65.92

Gene sequence:

>939_bases
ATGATCACGGCATACATTACCCATCCCCACTGCATGCGGCACCTCATGGGGCCGACGCATCCCGAGAGCCCCAAGCGTCT
GGAGGCGATTCGGGCGCGTCTGGCCCTGACCGGCATCCTGACCCACACCATGCAGTCCGATGCACCGCCCGTGACGCGGG
AGACCCTGGCCCTGGCGCACTCCCCGCAATATCTGGATGCCCTCGAGGCGCACGCCCCCACGCAAGGCCTGCACGAGCTG
GACGGCGACACGCACATGGGCCAGGACACCCTGACCGCCGCACGCCTGGCCGCCGGTGCGGTCGTGCGGGGCGTCGACCA
GGTGTTCCGTCATCAGGCAGACAATGTCTTCTGCGCCGTGCGTCCGCCCGGTCATCATGCCGAGCGCGGCACGGCCATGG
GCTTCTGTTTCTACAACAATATCGCCGTGGGGCTTGCGCATGCGCGACAGCGTCATGGCGTGGAGCGTGTCGCGGTACTC
GATTTCGACGTCCATCAGGGCAACGGAACGGTCGACATCTTCAAGAACGATCCGGGCGTGTTGATCTGCTCGAGCTTCCA
GTCCCCCTTCTATCCCTGGCGCTATCAACAGGGTCAATGGGACAACGTGCTCAACACGCCGCTGTCGGCAGGCGCCGATG
GTCATGAGTTTCGCCGGCGCGTGGAGGCCCAGTGGCTCCCCGCCCTGCAAGCCTTCAAACCGCAGCTGGTTCTGCTCTCG
GCGGGCTTCGACGCGCATCGCGACGATCCCATGGGCGGCCTCAACCTGCTCGAAGACGACTACTACTGGGTGACGCAGCT
GGCGCTCGATATCGCCCGCGTCTATGCCGAGGGTCGCCTGGTGTCGGCCCTCGAGGGCGGTTATCACCTGGACTCCCTGG
CCACCAGCGTCGAGGCCCACCTCAAGGCGCTGCTGGGTTTGCCGCTGGGCCATCCCTGA

Upstream 100 bases:

>100_bases
ATGGGCACTGTTCCTACAGCCTATCAGGCCTTAAGGTCGCACGCGGACAGCATGCATCAATCGTCCTATTCTGTATGGTG
TCCTTTGGACGGAGACCCGC

Downstream 100 bases:

>100_bases
CAAGCCCCCTCGCGCCGCCCCCTCGCGGCTGTGGTATCCTGCTGGAAACTTTATTTCCTATCGTGGAATGCCATGGCCAC
CCAGACCGATAGCGAAGCCG

Product: histone deacetylase superfamily protein protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MITAYITHPHCMRHLMGPTHPESPKRLEAIRARLALTGILTHTMQSDAPPVTRETLALAHSPQYLDALEAHAPTQGLHEL
DGDTHMGQDTLTAARLAAGAVVRGVDQVFRHQADNVFCAVRPPGHHAERGTAMGFCFYNNIAVGLAHARQRHGVERVAVL
DFDVHQGNGTVDIFKNDPGVLICSSFQSPFYPWRYQQGQWDNVLNTPLSAGADGHEFRRRVEAQWLPALQAFKPQLVLLS
AGFDAHRDDPMGGLNLLEDDYYWVTQLALDIARVYAEGRLVSALEGGYHLDSLATSVEAHLKALLGLPLGHP

Sequences:

>Translated_312_residues
MITAYITHPHCMRHLMGPTHPESPKRLEAIRARLALTGILTHTMQSDAPPVTRETLALAHSPQYLDALEAHAPTQGLHEL
DGDTHMGQDTLTAARLAAGAVVRGVDQVFRHQADNVFCAVRPPGHHAERGTAMGFCFYNNIAVGLAHARQRHGVERVAVL
DFDVHQGNGTVDIFKNDPGVLICSSFQSPFYPWRYQQGQWDNVLNTPLSAGADGHEFRRRVEAQWLPALQAFKPQLVLLS
AGFDAHRDDPMGGLNLLEDDYYWVTQLALDIARVYAEGRLVSALEGGYHLDSLATSVEAHLKALLGLPLGHP
>Mature_312_residues
MITAYITHPHCMRHLMGPTHPESPKRLEAIRARLALTGILTHTMQSDAPPVTRETLALAHSPQYLDALEAHAPTQGLHEL
DGDTHMGQDTLTAARLAAGAVVRGVDQVFRHQADNVFCAVRPPGHHAERGTAMGFCFYNNIAVGLAHARQRHGVERVAVL
DFDVHQGNGTVDIFKNDPGVLICSSFQSPFYPWRYQQGQWDNVLNTPLSAGADGHEFRRRVEAQWLPALQAFKPQLVLLS
AGFDAHRDDPMGGLNLLEDDYYWVTQLALDIARVYAEGRLVSALEGGYHLDSLATSVEAHLKALLGLPLGHP

Specific function: Putative deacetylase [H]

COG id: COG0123

COG function: function code BQ; Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone deacetylase family [H]

Homologues:

Organism=Homo sapiens, GI20070354, Length=315, Percent_Identity=36.1904761904762, Blast_Score=169, Evalue=3e-42,
Organism=Homo sapiens, GI13128864, Length=326, Percent_Identity=34.0490797546012, Blast_Score=161, Evalue=9e-40,
Organism=Homo sapiens, GI226529806, Length=303, Percent_Identity=34.6534653465347, Blast_Score=142, Evalue=3e-34,
Organism=Homo sapiens, GI17158039, Length=337, Percent_Identity=31.1572700296736, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI30795202, Length=337, Percent_Identity=31.1572700296736, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI30795204, Length=337, Percent_Identity=31.1572700296736, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI153085395, Length=329, Percent_Identity=32.5227963525836, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI62750349, Length=332, Percent_Identity=30.1204819277108, Blast_Score=128, Evalue=8e-30,
Organism=Homo sapiens, GI62750347, Length=332, Percent_Identity=30.1204819277108, Blast_Score=128, Evalue=8e-30,
Organism=Homo sapiens, GI169234807, Length=233, Percent_Identity=35.6223175965665, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI148539870, Length=233, Percent_Identity=35.6223175965665, Blast_Score=124, Evalue=9e-29,
Organism=Homo sapiens, GI13128862, Length=274, Percent_Identity=24.8175182481752, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI217272877, Length=304, Percent_Identity=25, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI209862883, Length=298, Percent_Identity=26.510067114094, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI8923769, Length=141, Percent_Identity=30.4964539007092, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI293336691, Length=263, Percent_Identity=24.7148288973384, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17540334, Length=308, Percent_Identity=33.7662337662338, Blast_Score=164, Evalue=7e-41,
Organism=Caenorhabditis elegans, GI193206283, Length=308, Percent_Identity=33.7662337662338, Blast_Score=163, Evalue=9e-41,
Organism=Caenorhabditis elegans, GI17540332, Length=308, Percent_Identity=33.7662337662338, Blast_Score=163, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI193209491, Length=342, Percent_Identity=32.1637426900585, Blast_Score=144, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI25154020, Length=304, Percent_Identity=30.5921052631579, Blast_Score=134, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI25154022, Length=304, Percent_Identity=29.9342105263158, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17537347, Length=307, Percent_Identity=31.2703583061889, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17534739, Length=330, Percent_Identity=23.6363636363636, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324307, Length=322, Percent_Identity=31.6770186335404, Blast_Score=136, Evalue=4e-33,
Organism=Saccharomyces cerevisiae, GI6325141, Length=97, Percent_Identity=42.2680412371134, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6323999, Length=271, Percent_Identity=25.0922509225092, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321244, Length=262, Percent_Identity=24.0458015267176, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24642146, Length=326, Percent_Identity=34.0490797546012, Blast_Score=164, Evalue=1e-40,
Organism=Drosophila melanogaster, GI281360899, Length=326, Percent_Identity=34.0490797546012, Blast_Score=164, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24642144, Length=326, Percent_Identity=34.0490797546012, Blast_Score=163, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24642142, Length=326, Percent_Identity=34.0490797546012, Blast_Score=163, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24641720, Length=328, Percent_Identity=33.2317073170732, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI281360799, Length=335, Percent_Identity=32.8358208955224, Blast_Score=135, Evalue=5e-32,
Organism=Drosophila melanogaster, GI281360801, Length=335, Percent_Identity=32.8358208955224, Blast_Score=135, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000286 [H]

Pfam domain/function: PF00850 Hist_deacetyl [H]

EC number: NA

Molecular weight: Translated: 34313; Mature: 34313

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITAYITHPHCMRHLMGPTHPESPKRLEAIRARLALTGILTHTMQSDAPPVTRETLALAH
CEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
SPQYLDALEAHAPTQGLHELDGDTHMGQDTLTAARLAAGAVVRGVDQVFRHQADNVFCAV
CCHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
RPPGHHAERGTAMGFCFYNNIAVGLAHARQRHGVERVAVLDFDVHQGNGTVDIFKNDPGV
CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEECCCCE
LICSSFQSPFYPWRYQQGQWDNVLNTPLSAGADGHEFRRRVEAQWLPALQAFKPQLVLLS
EEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
AGFDAHRDDPMGGLNLLEDDYYWVTQLALDIARVYAEGRLVSALEGGYHLDSLATSVEAH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHCCCCHHHHHHHHHHHH
LKALLGLPLGHP
HHHHHCCCCCCC
>Mature Secondary Structure
MITAYITHPHCMRHLMGPTHPESPKRLEAIRARLALTGILTHTMQSDAPPVTRETLALAH
CEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
SPQYLDALEAHAPTQGLHELDGDTHMGQDTLTAARLAAGAVVRGVDQVFRHQADNVFCAV
CCHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
RPPGHHAERGTAMGFCFYNNIAVGLAHARQRHGVERVAVLDFDVHQGNGTVDIFKNDPGV
CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEECCCCE
LICSSFQSPFYPWRYQQGQWDNVLNTPLSAGADGHEFRRRVEAQWLPALQAFKPQLVLLS
EEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
AGFDAHRDDPMGGLNLLEDDYYWVTQLALDIARVYAEGRLVSALEGGYHLDSLATSVEAH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHCCCCHHHHHHHHHHHH
LKALLGLPLGHP
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]