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The map label for this gene is ycjC [C]

Identifier: 92114029

GI number: 92114029

Start: 2166738

End: 2167370

Strand: Direct

Name: ycjC [C]

Synonym: Csal_1906

Alternate gene names: 92114029

Gene position: 2166738-2167370 (Clockwise)

Preceding gene: 92114028

Following gene: 92114033

Centisome position: 58.61

GC content: 62.09

Gene sequence:

>633_bases
ATGGCCACCCAGACCGATAGCGAAGCCGCTCTGCGTATCGCCTCCGGACGCAAAGCATTCGTGGAGCCGCTACGCCTTGG
CGAGCGCCTCAAGGAAATCCGCCTCTCCAACCGCTGGACACTGGAAGACGTCAGTCAGCGCACGGGACTGGCACGCTCGA
CCCTTTCCAAGATCGAGAACGACCAGATATCGCCTACCTTCAGTGCCGTGCAGAAGCTCATCGGCGGCCTCGGGATCGAC
CTGCCGCAATTGCTCACGCCACCCAAACCGCAATCGCGTACCCTGGGACGCCGCGACCTGACACGTGTCGGCGAGGGCAA
GCAGCATCCCACCCCGACCTACGAGCATGAGCTGCTGTCGTGGCAGCTGGCACAAAAGCGCATGATCCCGTTCAAGACCA
TCGTGCGTGCGCGGGACTTCAACGAGTTCAGCGAATGGGTGCGCCACGACGGAGAAGAGTTCCTGATGGTGCTCGACGGC
GACATATGGCTCTACACCGAGTTTTACGAACCCCTGCACCTTGCCCAAGGCGACAGCATCTACTTCGACAGCGACATGGG
ACACGCCCTGATCTCCGTCAGCGAGACGGACGCCGTCGTGCTCTCGGTCTGCACGCGAGGCGAGAACGCCTGA

Upstream 100 bases:

>100_bases
GCTGGGTTTGCCGCTGGGCCATCCCTGACAAGCCCCCTCGCGCCGCCCCCTCGCGGCTGTGGTATCCTGCTGGAAACTTT
ATTTCCTATCGTGGAATGCC

Downstream 100 bases:

>100_bases
CGCAAGACGCCCGGCACGAGGCCGGGCGTCTTGTCATCGTGGCGACTCATGCACGGCGACAATCACTCGATGTCTTTCAC
CGCGCTGTCACCGGAGAGTT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator HTH_3 Family; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Protein; XRE Family-Like Protein; Cupin 2 Conserved Barrel Domain Protein; Helix-Turn-Helix Transcriptional Regulator PuuR; Helix-Turn-Helix/Cupin Domain Protein; Cupin 2 Domain-Containing Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Xre Family; Transcription Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; HTH_3family Transcriptional Regulator; Phosphotransbutyrylase

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MATQTDSEAALRIASGRKAFVEPLRLGERLKEIRLSNRWTLEDVSQRTGLARSTLSKIENDQISPTFSAVQKLIGGLGID
LPQLLTPPKPQSRTLGRRDLTRVGEGKQHPTPTYEHELLSWQLAQKRMIPFKTIVRARDFNEFSEWVRHDGEEFLMVLDG
DIWLYTEFYEPLHLAQGDSIYFDSDMGHALISVSETDAVVLSVCTRGENA

Sequences:

>Translated_210_residues
MATQTDSEAALRIASGRKAFVEPLRLGERLKEIRLSNRWTLEDVSQRTGLARSTLSKIENDQISPTFSAVQKLIGGLGID
LPQLLTPPKPQSRTLGRRDLTRVGEGKQHPTPTYEHELLSWQLAQKRMIPFKTIVRARDFNEFSEWVRHDGEEFLMVLDG
DIWLYTEFYEPLHLAQGDSIYFDSDMGHALISVSETDAVVLSVCTRGENA
>Mature_209_residues
ATQTDSEAALRIASGRKAFVEPLRLGERLKEIRLSNRWTLEDVSQRTGLARSTLSKIENDQISPTFSAVQKLIGGLGIDL
PQLLTPPKPQSRTLGRRDLTRVGEGKQHPTPTYEHELLSWQLAQKRMIPFKTIVRARDFNEFSEWVRHDGEEFLMVLDGD
IWLYTEFYEPLHLAQGDSIYFDSDMGHALISVSETDAVVLSVCTRGENA

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23784; Mature: 23653

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQTDSEAALRIASGRKAFVEPLRLGERLKEIRLSNRWTLEDVSQRTGLARSTLSKIEN
CCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
DQISPTFSAVQKLIGGLGIDLPQLLTPPKPQSRTLGRRDLTRVGEGKQHPTPTYEHELLS
CCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHH
WQLAQKRMIPFKTIVRARDFNEFSEWVRHDGEEFLMVLDGDIWLYTEFYEPLHLAQGDSI
HHHHHHHCCHHHHHHHHHCHHHHHHHHHCCCCEEEEEECCCEEEEECHHCHHHHCCCCCE
YFDSDMGHALISVSETDAVVLSVCTRGENA
EEECCCCCEEEEECCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
ATQTDSEAALRIASGRKAFVEPLRLGERLKEIRLSNRWTLEDVSQRTGLARSTLSKIEN
CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
DQISPTFSAVQKLIGGLGIDLPQLLTPPKPQSRTLGRRDLTRVGEGKQHPTPTYEHELLS
CCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHH
WQLAQKRMIPFKTIVRARDFNEFSEWVRHDGEEFLMVLDGDIWLYTEFYEPLHLAQGDSI
HHHHHHHCCHHHHHHHHHCHHHHHHHHHCCCCEEEEEECCCEEEEECHHCHHHHCCCCCE
YFDSDMGHALISVSETDAVVLSVCTRGENA
EEECCCCCEEEEECCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA