Click here to switch to the map view.

The map label for this gene is yjjV [H]

Identifier: 92113952

GI number: 92113952

Start: 2085138

End: 2085905

Strand: Direct

Name: yjjV [H]

Synonym: Csal_1829

Alternate gene names: 92113952

Gene position: 2085138-2085905 (Clockwise)

Preceding gene: 92113951

Following gene: 92113954

Centisome position: 56.41

GC content: 62.37

Gene sequence:

>768_bases
ATGTCTGCCCGGTTGATCGACGCGCATTGCCATCTCGATTTCGATGTCTTCGATGCCGATCGCGAGGACGTCATGTCGCG
AGCGGCGGCGGTGGGCGTCGGTCATTTCATCGTGCCGGGGACGACACGCCGGCGCTGGCCGAACGTCGAACGGCTGGGGC
GTCGGGAAGATGTCAGCGTATGTTTCGGGCTGCATCCCTATTTTCTCGATGCCCACGACGTGCGCGACCTCGAAGCGCTG
GACACTCAGCTCGAAGCGTATCCCGACGCGGTCGCCATTGGCGAGTGCGGTATCGATGCACGGTTGTCGGACATCGACCG
GCAATGGCAGCTGTTCGATGCACAGTTGCGCCTGGCGAAACAGCACCGCTTGCCTGTGGTGATCCACTGCGTGCAAGCCA
ACGATCAAGTCGCCAAGCGCCTGCATCAACTCGATCTGCCCGCCGGCGGTCTGATCCATGCTTTTGCGGGGAGTCCCGAA
CAGGCGCGCCGATTTCTGGACGCGGGATTCGTCGTGGGCATAGGTGGTGCCTCCACCTATGAGCGTGCCCGGCGGCTGCA
TCGAGCCGTGCAGTCATTGCCGGACGATGGTTACGTGCTGGAAACGGATAGCCCCGACATGCCTCTGTCGGGATATCAAG
GCCAACGCAACGAGCCGTCGCATGTGCATGATATCTGTCACTGCGTGGCGGCCTTGAGAGATCAACCTCATGCCACGGTG
GCGGCGCACAGCACCGCCACCGCACAGCGGCTTTTCAGGCTGGTGTAG

Upstream 100 bases:

>100_bases
TGACGCAACGGCTTGACCGCCCGCTTTCCGCGTCTCGGAGCGACACGTCTTGCGCCAGACGCCATGGCGTGCCGCCAGGA
TAGCTGCAAGGGAGGGAATC

Downstream 100 bases:

>100_bases
CCAGGCGCTTCTCAAGCCTGGCCGGCCAGGCTCTCCGGATCGACACGCTCGACAGCATAGGGCAGGTCCAGGGGAGTGAG
TGCATTGCCTTCGACGACCA

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MSARLIDAHCHLDFDVFDADREDVMSRAAAVGVGHFIVPGTTRRRWPNVERLGRREDVSVCFGLHPYFLDAHDVRDLEAL
DTQLEAYPDAVAIGECGIDARLSDIDRQWQLFDAQLRLAKQHRLPVVIHCVQANDQVAKRLHQLDLPAGGLIHAFAGSPE
QARRFLDAGFVVGIGGASTYERARRLHRAVQSLPDDGYVLETDSPDMPLSGYQGQRNEPSHVHDICHCVAALRDQPHATV
AAHSTATAQRLFRLV

Sequences:

>Translated_255_residues
MSARLIDAHCHLDFDVFDADREDVMSRAAAVGVGHFIVPGTTRRRWPNVERLGRREDVSVCFGLHPYFLDAHDVRDLEAL
DTQLEAYPDAVAIGECGIDARLSDIDRQWQLFDAQLRLAKQHRLPVVIHCVQANDQVAKRLHQLDLPAGGLIHAFAGSPE
QARRFLDAGFVVGIGGASTYERARRLHRAVQSLPDDGYVLETDSPDMPLSGYQGQRNEPSHVHDICHCVAALRDQPHATV
AAHSTATAQRLFRLV
>Mature_254_residues
SARLIDAHCHLDFDVFDADREDVMSRAAAVGVGHFIVPGTTRRRWPNVERLGRREDVSVCFGLHPYFLDAHDVRDLEALD
TQLEAYPDAVAIGECGIDARLSDIDRQWQLFDAQLRLAKQHRLPVVIHCVQANDQVAKRLHQLDLPAGGLIHAFAGSPEQ
ARRFLDAGFVVGIGGASTYERARRLHRAVQSLPDDGYVLETDSPDMPLSGYQGQRNEPSHVHDICHCVAALRDQPHATVA
AHSTATAQRLFRLV

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=267, Percent_Identity=25.4681647940075, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=30.6818181818182, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=30.6818181818182, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=30.1470588235294, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI225903439, Length=173, Percent_Identity=28.9017341040462, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI226061614, Length=252, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI225903424, Length=281, Percent_Identity=26.3345195729537, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI226061595, Length=236, Percent_Identity=30.9322033898305, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=39.5348837209302, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=30.7392996108949, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=30.8880308880309, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=285, Percent_Identity=28.7719298245614, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=273, Percent_Identity=24.5421245421245, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24648690, Length=285, Percent_Identity=28.0701754385965, Blast_Score=77, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28347; Mature: 28216

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARLIDAHCHLDFDVFDADREDVMSRAAAVGVGHFIVPGTTRRRWPNVERLGRREDVSV
CCCEEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCCEE
CFGLHPYFLDAHDVRDLEALDTQLEAYPDAVAIGECGIDARLSDIDRQWQLFDAQLRLAK
EEECCCCEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
QHRLPVVIHCVQANDQVAKRLHQLDLPAGGLIHAFAGSPEQARRFLDAGFVVGIGGASTY
HCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCEEEECCCHHH
ERARRLHRAVQSLPDDGYVLETDSPDMPLSGYQGQRNEPSHVHDICHCVAALRDQPHATV
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
AAHSTATAQRLFRLV
EECHHHHHHHHHHCC
>Mature Secondary Structure 
SARLIDAHCHLDFDVFDADREDVMSRAAAVGVGHFIVPGTTRRRWPNVERLGRREDVSV
CCEEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCCEE
CFGLHPYFLDAHDVRDLEALDTQLEAYPDAVAIGECGIDARLSDIDRQWQLFDAQLRLAK
EEECCCCEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
QHRLPVVIHCVQANDQVAKRLHQLDLPAGGLIHAFAGSPEQARRFLDAGFVVGIGGASTY
HCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCEEEECCCHHH
ERARRLHRAVQSLPDDGYVLETDSPDMPLSGYQGQRNEPSHVHDICHCVAALRDQPHATV
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
AAHSTATAQRLFRLV
EECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]