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The map label for this gene is exbD2 [H]

Identifier: 92113742

GI number: 92113742

Start: 1838906

End: 1839316

Strand: Direct

Name: exbD2 [H]

Synonym: Csal_1618

Alternate gene names: 92113742

Gene position: 1838906-1839316 (Clockwise)

Preceding gene: 92113741

Following gene: 92113743

Centisome position: 49.75

GC content: 65.94

Gene sequence:

>411_bases
ATGCGTAGGCGTCGACTACAGGACGTCAACGACGACGCCCAGGAGATCAACCTCACGCCGATGCTCGACGTGGTGTTCAT
CATGTTGATCTTCTTCATCGTGACGACCAGCTTCATCAAGGAAAGCGGGGTCGAGATCGAGCGCCCCGAATCGTCGGCCG
CCACGGCGCGTCCCGATGCCCAGGTGATGGTCGCCATCACGGCCGAGGACGCCGTGTGGGTGGATGGTCAGCCGGTGGAC
GCGCACCGCGTGGGCAACGAGGTGGCCAGCCTGGTCAGCGACGAGGGTGGGGTCGTGATCCAGGCCGATCGCCAATCGAC
CACGGGGCTGCTCATCGAGGTCATGGATGCCATCCGCGACGCCGGCGTGGATGACGTCGCCGTGGCGGCGGAGCGAGGCG
CCGACGGATGA

Upstream 100 bases:

>100_bases
GCCGTGGTGGGGCTGTTGTTCACCACACGACTCGAACACGTGATTCGGCGCGAGGACCAGCGGTTGCATGACCGCATGGC
GCGTGCCGTGGAGGATGCCA

Downstream 100 bases:

>100_bases
GGGCGATCGCGGGAGCCGCGGGCGGCGTGCTGATGGCGCTGGGCCTGTTCTATCTGCTGGCATTGCTGGTGGCGCCGCCG
GACGATGCGCGCGAGCCCAT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MRRRRLQDVNDDAQEINLTPMLDVVFIMLIFFIVTTSFIKESGVEIERPESSAATARPDAQVMVAITAEDAVWVDGQPVD
AHRVGNEVASLVSDEGGVVIQADRQSTTGLLIEVMDAIRDAGVDDVAVAAERGADG

Sequences:

>Translated_136_residues
MRRRRLQDVNDDAQEINLTPMLDVVFIMLIFFIVTTSFIKESGVEIERPESSAATARPDAQVMVAITAEDAVWVDGQPVD
AHRVGNEVASLVSDEGGVVIQADRQSTTGLLIEVMDAIRDAGVDDVAVAAERGADG
>Mature_136_residues
MRRRRLQDVNDDAQEINLTPMLDVVFIMLIFFIVTTSFIKESGVEIERPESSAATARPDAQVMVAITAEDAVWVDGQPVD
AHRVGNEVASLVSDEGGVVIQADRQSTTGLLIEVMDAIRDAGVDDVAVAAERGADG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14640; Mature: 14640

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRRLQDVNDDAQEINLTPMLDVVFIMLIFFIVTTSFIKESGVEIERPESSAATARPDA
CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC
QVMVAITAEDAVWVDGQPVDAHRVGNEVASLVSDEGGVVIQADRQSTTGLLIEVMDAIRD
EEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
AGVDDVAVAAERGADG
CCCCHHHHHHHCCCCC
>Mature Secondary Structure
MRRRRLQDVNDDAQEINLTPMLDVVFIMLIFFIVTTSFIKESGVEIERPESSAATARPDA
CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC
QVMVAITAEDAVWVDGQPVDAHRVGNEVASLVSDEGGVVIQADRQSTTGLLIEVMDAIRD
EEEEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
AGVDDVAVAAERGADG
CCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]