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The map label for this gene is yncD [H]

Identifier: 92112229

GI number: 92112229

Start: 118198

End: 120234

Strand: Direct

Name: yncD [H]

Synonym: Csal_0094

Alternate gene names: 92112229

Gene position: 118198-120234 (Clockwise)

Preceding gene: 92112228

Following gene: 92112232

Centisome position: 3.2

GC content: 63.48

Gene sequence:

>2037_bases
ATGACCCATCGCTACCTTCCTGCTTCCCTGCTGCTTGGCGCCTTGAGCGCTTCCGGCGCCGCGTTCTCCCAGACGATCTC
GCCGGAGGTGATGGAGGTGACGGCGCCGCGCCTCGATCGCGAGCTCTATGCCACACCCGCCGCCGTTTCCGTGGTCGACC
GCGACAGCATTGCGCAAGGCCAGCAGCGTGTTCGGCTCGACGAGTCGCTGGTGACCGTGCCCGGGGTGTTCCTGCAAAAC
CGTGACAACTTCGCCCAGGGCGAGCGCCTGGCGATTCGTGGCTTCGGCGCACGGGCACCGTTCGGTGTACGTGGAGTCAC
GGTGATGGCCGACGGGATTCCCTACACGCTGCCCGATGGGCAGGCGCAGCTGGATGCCATCGACCTCGACAGCGCCCAGC
GGATCGAGGTGATCCGCGGACCGTCGTCGGTGCTCTACGGCAATGCGGCCGGTGGCGTGCTGAGCGTGACCACGGCCGAT
GGCCGTGACGACCAGAAGACTCGCCTGGGGGCCGAGATCGGCAGCGACGGCTACCGGAAATATCGCTTCAGCGATGGCGG
CGTGAACGGCCCCTGGTCCCATCATGTGAGCGTCTCGGCGCTGAATTTCGACGGGTACCGGGATCAGAGCCAGGTGGAGA
AATACCATCTGAACGCCAAGGTGCGCCGTGAGCTGGGCAATGATCGGGCACTGACGGCCATCGTCAACTTGCTGGACAAT
CCGCGCTCCGAGGACCCGGGCGGACTGACGCGCGAGCAGGTCGATGAAGACCGTAACCAGGCCGGCGACTTCACCGAGGA
ATACGACACGGGCCAGAACGTCGACCAGCAGGTGCTGGGGCTGCAGTACGAGGATCTGTCCGCCGGGCCGGGCGAGCTGT
ACGTCAAAGGCTTCTATCTACAGCGTGACTTCGAACAGCAACTGCCCTATCCCGGCGACAGTCTCCTCGGCTACGAGCGT
GACTACTTCGGGGGCAGTGCCGAGTATCACCAGGATCTGCTGCTGGGCGAGCTGCCGCTGCGATATGTGGTCGGTGTCGA
TGTGGCGCGTCAAGAGGACGATCGCTGGCGGCGTAACGTCGAGTTCGATGGCACGGTCGGCGGTGACACCGCCGACGAGA
CCCAGACGGCCACTTCGCTGGGTATTTTCGCCCAGGGCGATCTGGATCTCACCGACAAGTTGACGCTATCGCTGGGGACC
CGCTACGACCGCGTCGACTTCGACATCGACGATGATTTCGGCAGCGACGGCGACCAGAGCGGCGACCGTACCTTCCGCGA
ATGGAGCGGCTCGGCGGGCTTGAGCTATCGGTACTTGCCGACGCATCAGGCTTATGTCAATACCGGCACGTCTTTTGAAA
CTCCCACGTTTTCTGAATTCGCCAACCCCAGTGGCGTGGGCGGCTTCAATCCTGCCGTCGAGCCACAGAAGGCCTGGAAT
CGCGAAATCGGGCTGCGGGGGAATTTCGACAATGGCGTGGATTACGATCTGGCGCTGTTCTCGGTGCGTGTGCGCGACGA
GCTGGTGCCTTACAACGAGAATGGGCGGGACTTTTACCGCAATGCCGGCGATTCCTCGCGGGATGGTATCGAGCTGGCGC
TGGGCTGGCAGATGACGCCGAGCTGGCGTCTCGACAGTGCCTTGACGCTGGCCAGGTACGAATTCGATGAATACGACACC
CAGGATGGCAACTACGGGGGCAACCGCATCCCCGGCCTGCCGGAGCAGACCTGGATGAACCGGCTGACCTGGAAGGGCTT
CGACGAGCGCTTCGCGACGCTCGAGACGCAGTACATCGGCGACATGGTGGCGGACGACGCCAACGATGTGGCGGTCGACG
ATTACTGGCTGGTCCACCTGCGCGCCGGCGATGGCTGGCACCTGGGTGGCGATACCTTGCTCAAGGGCTACGTGGGGGTG
CGTAACCTCTTCGATCGCGAGCATTTCGCCAATGTGCGGATCAATGCCAATAACGACCGCTATTTCGAACCGGCATCGGG
ACGGACCGTCTACGCTGGTATGGAAGTCGCGTTCTAG

Upstream 100 bases:

>100_bases
AGGCGGGGGTACATGCGATATGCTAATATTCACCCCCGCTTAATGAATTCGTCCACCGGTGGCATGCCGCCTCCGGTAGA
CCCGACCTGTCGATATCGCC

Downstream 100 bases:

>100_bases
ACGCGTCGCCTCAATCGCTCACTGGTCGATGGCATCGGCCGGTGGGCTCGGGATCGATAAGCGATAAAAGAGGGAACTCA
TGCGTTATCTATTGGCAATG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 678; Mature: 677

Protein sequence:

>678_residues
MTHRYLPASLLLGALSASGAAFSQTISPEVMEVTAPRLDRELYATPAAVSVVDRDSIAQGQQRVRLDESLVTVPGVFLQN
RDNFAQGERLAIRGFGARAPFGVRGVTVMADGIPYTLPDGQAQLDAIDLDSAQRIEVIRGPSSVLYGNAAGGVLSVTTAD
GRDDQKTRLGAEIGSDGYRKYRFSDGGVNGPWSHHVSVSALNFDGYRDQSQVEKYHLNAKVRRELGNDRALTAIVNLLDN
PRSEDPGGLTREQVDEDRNQAGDFTEEYDTGQNVDQQVLGLQYEDLSAGPGELYVKGFYLQRDFEQQLPYPGDSLLGYER
DYFGGSAEYHQDLLLGELPLRYVVGVDVARQEDDRWRRNVEFDGTVGGDTADETQTATSLGIFAQGDLDLTDKLTLSLGT
RYDRVDFDIDDDFGSDGDQSGDRTFREWSGSAGLSYRYLPTHQAYVNTGTSFETPTFSEFANPSGVGGFNPAVEPQKAWN
REIGLRGNFDNGVDYDLALFSVRVRDELVPYNENGRDFYRNAGDSSRDGIELALGWQMTPSWRLDSALTLARYEFDEYDT
QDGNYGGNRIPGLPEQTWMNRLTWKGFDERFATLETQYIGDMVADDANDVAVDDYWLVHLRAGDGWHLGGDTLLKGYVGV
RNLFDREHFANVRINANNDRYFEPASGRTVYAGMEVAF

Sequences:

>Translated_678_residues
MTHRYLPASLLLGALSASGAAFSQTISPEVMEVTAPRLDRELYATPAAVSVVDRDSIAQGQQRVRLDESLVTVPGVFLQN
RDNFAQGERLAIRGFGARAPFGVRGVTVMADGIPYTLPDGQAQLDAIDLDSAQRIEVIRGPSSVLYGNAAGGVLSVTTAD
GRDDQKTRLGAEIGSDGYRKYRFSDGGVNGPWSHHVSVSALNFDGYRDQSQVEKYHLNAKVRRELGNDRALTAIVNLLDN
PRSEDPGGLTREQVDEDRNQAGDFTEEYDTGQNVDQQVLGLQYEDLSAGPGELYVKGFYLQRDFEQQLPYPGDSLLGYER
DYFGGSAEYHQDLLLGELPLRYVVGVDVARQEDDRWRRNVEFDGTVGGDTADETQTATSLGIFAQGDLDLTDKLTLSLGT
RYDRVDFDIDDDFGSDGDQSGDRTFREWSGSAGLSYRYLPTHQAYVNTGTSFETPTFSEFANPSGVGGFNPAVEPQKAWN
REIGLRGNFDNGVDYDLALFSVRVRDELVPYNENGRDFYRNAGDSSRDGIELALGWQMTPSWRLDSALTLARYEFDEYDT
QDGNYGGNRIPGLPEQTWMNRLTWKGFDERFATLETQYIGDMVADDANDVAVDDYWLVHLRAGDGWHLGGDTLLKGYVGV
RNLFDREHFANVRINANNDRYFEPASGRTVYAGMEVAF
>Mature_677_residues
THRYLPASLLLGALSASGAAFSQTISPEVMEVTAPRLDRELYATPAAVSVVDRDSIAQGQQRVRLDESLVTVPGVFLQNR
DNFAQGERLAIRGFGARAPFGVRGVTVMADGIPYTLPDGQAQLDAIDLDSAQRIEVIRGPSSVLYGNAAGGVLSVTTADG
RDDQKTRLGAEIGSDGYRKYRFSDGGVNGPWSHHVSVSALNFDGYRDQSQVEKYHLNAKVRRELGNDRALTAIVNLLDNP
RSEDPGGLTREQVDEDRNQAGDFTEEYDTGQNVDQQVLGLQYEDLSAGPGELYVKGFYLQRDFEQQLPYPGDSLLGYERD
YFGGSAEYHQDLLLGELPLRYVVGVDVARQEDDRWRRNVEFDGTVGGDTADETQTATSLGIFAQGDLDLTDKLTLSLGTR
YDRVDFDIDDDFGSDGDQSGDRTFREWSGSAGLSYRYLPTHQAYVNTGTSFETPTFSEFANPSGVGGFNPAVEPQKAWNR
EIGLRGNFDNGVDYDLALFSVRVRDELVPYNENGRDFYRNAGDSSRDGIELALGWQMTPSWRLDSALTLARYEFDEYDTQ
DGNYGGNRIPGLPEQTWMNRLTWKGFDERFATLETQYIGDMVADDANDVAVDDYWLVHLRAGDGWHLGGDTLLKGYVGVR
NLFDREHFANVRINANNDRYFEPASGRTVYAGMEVAF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=702, Percent_Identity=34.1880341880342, Blast_Score=319, Evalue=4e-88,
Organism=Escherichia coli, GI1790405, Length=545, Percent_Identity=24.2201834862385, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 75234; Mature: 75103

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHRYLPASLLLGALSASGAAFSQTISPEVMEVTAPRLDRELYATPAAVSVVDRDSIAQG
CCCCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHCCHHCHHHHCCCCEEEEECCHHHHHH
QQRVRLDESLVTVPGVFLQNRDNFAQGERLAIRGFGARAPFGVRGVTVMADGIPYTLPDG
HHHHHHCCCCEECCCEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEECCCC
QAQLDAIDLDSAQRIEVIRGPSSVLYGNAAGGVLSVTTADGRDDQKTRLGAEIGSDGYRK
CCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEE
YRFSDGGVNGPWSHHVSVSALNFDGYRDQSQVEKYHLNAKVRRELGNDRALTAIVNLLDN
EEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCC
PRSEDPGGLTREQVDEDRNQAGDFTEEYDTGQNVDQQVLGLQYEDLSAGPGELYVKGFYL
CCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCHHHHHHCCEECCCCCCCCEEEEEEEEE
QRDFEQQLPYPGDSLLGYERDYFGGSAEYHQDLLLGELPLRYVVGVDVARQEDDRWRRNV
ECCHHHHCCCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCEEEEEECCHHCCCCHHHHCCC
EFDGTVGGDTADETQTATSLGIFAQGDLDLTDKLTLSLGTRYDRVDFDIDDDFGSDGDQS
CCCCCCCCCCCCCHHHHHHEEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCC
GDRTFREWSGSAGLSYRYLPTHQAYVNTGTSFETPTFSEFANPSGVGGFNPAVEPQKAWN
CCHHHHHCCCCCCCEEEECCCCHHEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHC
REIGLRGNFDNGVDYDLALFSVRVRDELVPYNENGRDFYRNAGDSSRDGIELALGWQMTP
CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCC
SWRLDSALTLARYEFDEYDTQDGNYGGNRIPGLPEQTWMNRLTWKGFDERFATLETQYIG
CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
DMVADDANDVAVDDYWLVHLRAGDGWHLGGDTLLKGYVGVRNLFDREHFANVRINANNDR
HHHHCCCCCEEECCEEEEEEECCCCEECCHHHHHHHHHHHHHHHCHHHHCEEEEECCCCC
YFEPASGRTVYAGMEVAF
EECCCCCCEEEECEEECC
>Mature Secondary Structure 
THRYLPASLLLGALSASGAAFSQTISPEVMEVTAPRLDRELYATPAAVSVVDRDSIAQG
CCCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHCCHHCHHHHCCCCEEEEECCHHHHHH
QQRVRLDESLVTVPGVFLQNRDNFAQGERLAIRGFGARAPFGVRGVTVMADGIPYTLPDG
HHHHHHCCCCEECCCEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEECCCC
QAQLDAIDLDSAQRIEVIRGPSSVLYGNAAGGVLSVTTADGRDDQKTRLGAEIGSDGYRK
CCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEE
YRFSDGGVNGPWSHHVSVSALNFDGYRDQSQVEKYHLNAKVRRELGNDRALTAIVNLLDN
EEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHCC
PRSEDPGGLTREQVDEDRNQAGDFTEEYDTGQNVDQQVLGLQYEDLSAGPGELYVKGFYL
CCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCHHHHHHCCEECCCCCCCCEEEEEEEEE
QRDFEQQLPYPGDSLLGYERDYFGGSAEYHQDLLLGELPLRYVVGVDVARQEDDRWRRNV
ECCHHHHCCCCCCCCCCCCHHCCCCCHHHHHHHHHHCCCEEEEEECCHHCCCCHHHHCCC
EFDGTVGGDTADETQTATSLGIFAQGDLDLTDKLTLSLGTRYDRVDFDIDDDFGSDGDQS
CCCCCCCCCCCCCHHHHHHEEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCC
GDRTFREWSGSAGLSYRYLPTHQAYVNTGTSFETPTFSEFANPSGVGGFNPAVEPQKAWN
CCHHHHHCCCCCCCEEEECCCCHHEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHC
REIGLRGNFDNGVDYDLALFSVRVRDELVPYNENGRDFYRNAGDSSRDGIELALGWQMTP
CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCC
SWRLDSALTLARYEFDEYDTQDGNYGGNRIPGLPEQTWMNRLTWKGFDERFATLETQYIG
CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
DMVADDANDVAVDDYWLVHLRAGDGWHLGGDTLLKGYVGVRNLFDREHFANVRINANNDR
HHHHCCCCCEEECCEEEEEEECCCCEECCHHHHHHHHHHHHHHHCHHHHCEEEEECCCCC
YFEPASGRTVYAGMEVAF
EECCCCCCEEEECEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]