Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is yiaY [H]
Identifier: 91789182
GI number: 91789182
Start: 3520863
End: 3522119
Strand: Direct
Name: yiaY [H]
Synonym: Bpro_3326
Alternate gene names: 91789182
Gene position: 3520863-3522119 (Clockwise)
Preceding gene: 91789179
Following gene: 91789183
Centisome position: 67.71
GC content: 61.34
Gene sequence:
>1257_bases ATGCCTGCGAACCCCGCTCAGCCCGATATCAATCCCATCTTTTTTTGCTCCCCCACCCGAATCATGTTTGGCGCCGGCGT GCGTACCGAACTGCCGCCACTCCTTGCGCAATTGGGCTACCAGCGTGCAGCGATCGTCACCGACCGGTTCTTCTCCGCGC CAGGTCGCGCCGCCTCGGAACTGGTTGATGGGTTGAAAAGGGTTGGCATCAGTTCGGTCATGTTTGACGGCGGCCTGCCC GATCCTTCCCTGGAACTATGCGATCGGGCCAGTGCGCACTTGCGGGAGCAGGGAGCAGTTGACTGCGTGATTGCCGTTGG AGGGGGAAGCAACATTGATCTCGCCAAGGTAATGACGCTTACGTTGACCAGCCATCACGCCGCGGCACATTACGTCGGAA AGCCGAGGCTGGATACGAAGCCGCTGCCGCTCATCGCGATGCCAACCACGGCTGGCACGGCTTCTGAAATCACCCCGGGC GCGATTCTTGTTTCGGGAGATGGGCAGACCAAGGTTGCGGTGATGGATAACGAGTTGCGGGCTCGCATCGCTGTTATCGA TCCCGAACTCACGCTGTCATGCCCGCCCCGCGTGACCGCTGATGCAGGTGTGGATGCGCTGACCCATGCCATTGAATCGT TCATCACGATGGACGCCAGCGATTTCAACCGCGAAGGACAGGCTGACCCGGGTTATTCAGGCCGCAATGCCCTCACCCGC ATCTTTGCGCGGGAAGCCATTCGCTTGTGCTTCGCCCACCTGCAAAGAGCTTACCGGTGCCCGGACGACATTCAGGCGCG CACCGGCATGGCGCTCGCAAGCTTGTACGCAGGCATGTCCTATGGGAATGCAGGACTTCACGCTGTCCACGCATTGGCGT ATGGCGTAGCCGCGCTCACGCATGAGTCGCATGGCACCACCAACGCGGTCATGCTGCCATATGTAATGGCGGAACTTGCC GCTGATCGGATGGAGGACCTGTGCGAAATCGCCCGGATGGCAAACGTCCATCACGAGCCGCACAGTTCGCTGAAAGGAGC GGCGGCGGGCGCCCACCATGTAAGAGAGCTGATCAGGTCAGTCGGCATTGCAACCACGCTCGCCGAGCTCGGAGTCACCG CTCCAGACCTGGGTCGCGTTGCGGCGGCGGGAATTGCCGTCACCCGCCTCACCAAAGCCTTTCCCGGTGGACAGGCAGAG CGGCGGTACCTGGAGATTGTTCATGCCGCCTTTCAGGGCACGCTTCCCGATGCCTGA
Upstream 100 bases:
>100_bases GGTGTTCACAGAATCTCCTAACAAGTGAAAGCTGCTGGTCGAATGCCTGATGGACTGGTAATATATCACTCACATATCTT TTTTGTCAATGGAGACTGAA
Downstream 100 bases:
>100_bases TAGCTCAGGTGTATGGAGTGCGTATGGAGTGTGTATGGAGATGAGATACTAGTCATATCGACAGGAGGTATTTTGGCAAC AAGCAAAAAAATTCGGCCAA
Product: iron-containing alcohol dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MPANPAQPDINPIFFCSPTRIMFGAGVRTELPPLLAQLGYQRAAIVTDRFFSAPGRAASELVDGLKRVGISSVMFDGGLP DPSLELCDRASAHLREQGAVDCVIAVGGGSNIDLAKVMTLTLTSHHAAAHYVGKPRLDTKPLPLIAMPTTAGTASEITPG AILVSGDGQTKVAVMDNELRARIAVIDPELTLSCPPRVTADAGVDALTHAIESFITMDASDFNREGQADPGYSGRNALTR IFAREAIRLCFAHLQRAYRCPDDIQARTGMALASLYAGMSYGNAGLHAVHALAYGVAALTHESHGTTNAVMLPYVMAELA ADRMEDLCEIARMANVHHEPHSSLKGAAAGAHHVRELIRSVGIATTLAELGVTAPDLGRVAAAGIAVTRLTKAFPGGQAE RRYLEIVHAAFQGTLPDA
Sequences:
>Translated_418_residues MPANPAQPDINPIFFCSPTRIMFGAGVRTELPPLLAQLGYQRAAIVTDRFFSAPGRAASELVDGLKRVGISSVMFDGGLP DPSLELCDRASAHLREQGAVDCVIAVGGGSNIDLAKVMTLTLTSHHAAAHYVGKPRLDTKPLPLIAMPTTAGTASEITPG AILVSGDGQTKVAVMDNELRARIAVIDPELTLSCPPRVTADAGVDALTHAIESFITMDASDFNREGQADPGYSGRNALTR IFAREAIRLCFAHLQRAYRCPDDIQARTGMALASLYAGMSYGNAGLHAVHALAYGVAALTHESHGTTNAVMLPYVMAELA ADRMEDLCEIARMANVHHEPHSSLKGAAAGAHHVRELIRSVGIATTLAELGVTAPDLGRVAAAGIAVTRLTKAFPGGQAE RRYLEIVHAAFQGTLPDA >Mature_417_residues PANPAQPDINPIFFCSPTRIMFGAGVRTELPPLLAQLGYQRAAIVTDRFFSAPGRAASELVDGLKRVGISSVMFDGGLPD PSLELCDRASAHLREQGAVDCVIAVGGGSNIDLAKVMTLTLTSHHAAAHYVGKPRLDTKPLPLIAMPTTAGTASEITPGA ILVSGDGQTKVAVMDNELRARIAVIDPELTLSCPPRVTADAGVDALTHAIESFITMDASDFNREGQADPGYSGRNALTRI FAREAIRLCFAHLQRAYRCPDDIQARTGMALASLYAGMSYGNAGLHAVHALAYGVAALTHESHGTTNAVMLPYVMAELAA DRMEDLCEIARMANVHHEPHSSLKGAAAGAHHVRELIRSVGIATTLAELGVTAPDLGRVAAAGIAVTRLTKAFPGGQAER RYLEIVHAAFQGTLPDA
Specific function: Unknown
COG id: COG1454
COG function: function code C; Alcohol dehydrogenase, class IV
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI133922590, Length=425, Percent_Identity=29.1764705882353, Blast_Score=146, Evalue=3e-35, Organism=Escherichia coli, GI48994951, Length=370, Percent_Identity=32.7027027027027, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI1789163, Length=366, Percent_Identity=31.4207650273224, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI87082107, Length=347, Percent_Identity=32.8530259365994, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1787493, Length=331, Percent_Identity=29.607250755287, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789386, Length=385, Percent_Identity=25.4545454545455, Blast_Score=83, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17537053, Length=293, Percent_Identity=33.7883959044369, Blast_Score=139, Evalue=3e-33, Organism=Saccharomyces cerevisiae, GI6321181, Length=370, Percent_Identity=32.972972972973, Blast_Score=158, Evalue=1e-39, Organism=Drosophila melanogaster, GI24657991, Length=428, Percent_Identity=30.1401869158879, Blast_Score=139, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 - InterPro: IPR018211 [H]
Pfam domain/function: PF00465 Fe-ADH [H]
EC number: =1.1.1.1 [H]
Molecular weight: Translated: 44049; Mature: 43918
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPANPAQPDINPIFFCSPTRIMFGAGVRTELPPLLAQLGYQRAAIVTDRFFSAPGRAASE CCCCCCCCCCCEEEEECCCCEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHH LVDGLKRVGISSVMFDGGLPDPSLELCDRASAHLREQGAVDCVIAVGGGSNIDLAKVMTL HHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHEEE TLTSHHAAAHYVGKPRLDTKPLPLIAMPTTAGTASEITPGAILVSGDGQTKVAVMDNELR HHHCCHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCE ARIAVIDPELTLSCPPRVTADAGVDALTHAIESFITMDASDFNREGQADPGYSGRNALTR EEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHH IFAREAIRLCFAHLQRAYRCPDDIQARTGMALASLYAGMSYGNAGLHAVHALAYGVAALT HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH HESHGTTNAVMLPYVMAELAADRMEDLCEIARMANVHHEPHSSLKGAAAGAHHVRELIRS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHH VGIATTLAELGVTAPDLGRVAAAGIAVTRLTKAFPGGQAERRYLEIVHAAFQGTLPDA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PANPAQPDINPIFFCSPTRIMFGAGVRTELPPLLAQLGYQRAAIVTDRFFSAPGRAASE CCCCCCCCCCEEEEECCCCEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHH LVDGLKRVGISSVMFDGGLPDPSLELCDRASAHLREQGAVDCVIAVGGGSNIDLAKVMTL HHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHEEE TLTSHHAAAHYVGKPRLDTKPLPLIAMPTTAGTASEITPGAILVSGDGQTKVAVMDNELR HHHCCHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCE ARIAVIDPELTLSCPPRVTADAGVDALTHAIESFITMDASDFNREGQADPGYSGRNALTR EEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHHHHH IFAREAIRLCFAHLQRAYRCPDDIQARTGMALASLYAGMSYGNAGLHAVHALAYGVAALT HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH HESHGTTNAVMLPYVMAELAADRMEDLCEIARMANVHHEPHSSLKGAAAGAHHVRELIRS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHH VGIATTLAELGVTAPDLGRVAAAGIAVTRLTKAFPGGQAERRYLEIVHAAFQGTLPDA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503; 7768815 [H]