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The map label for this gene is ydhC [H]

Identifier: 91789183

GI number: 91789183

Start: 3522150

End: 3522902

Strand: Direct

Name: ydhC [H]

Synonym: Bpro_3327

Alternate gene names: 91789183

Gene position: 3522150-3522902 (Clockwise)

Preceding gene: 91789182

Following gene: 91789184

Centisome position: 67.73

GC content: 58.03

Gene sequence:

>753_bases
GTGTATGGAGATGAGATACTAGTCATATCGACAGGAGGTATTTTGGCAACAAGCAAAAAAATTCGGCCAACACCCCGCTC
CCGTTCCGACAGGGCGCCCGCTGGCGGAAATGATCTGAGTCTCACGGAGCAGGCCTACAGCCAGCTTGAAGAGATGATTG
TCACCCTCAAGCTGGCACCCGGAAAGCTCGTGACCGAAGCTGAATTGTCTGAATTGCTGGGTATTGGGCGAACCCCCATC
CGGGAGGCCCTGCAACGGCTGGCGGCTCAGCGGCTGGTCCGTGTCGTGCCGCGCCGCGGCATCGCGATCTCGGACATAGA
CGTGAAAGCGCAGTTGCGGCTTCTGGAGGTCAGGCGAGAGCTGGAGCGGCTCATGTGTCGAAATGCAGCTCGCAGGGCAT
CCGCTGAAGAAAGAGCCGAGCTTGGCCGGCTTGCCGCGGCCTTCAAGGAGTGCGCAAAAACCGGGGATGCGGAAAAGTTC
ATGCGCATCGACAGGGCGTTTAATGAACTCTGTCTCGTGGCGGCCCGCAATGAGTTCACCACCAGTGCAATGAGCCTGAT
GAATTCACTCTCCAGGCGCTTCTGGTTTCTTCATTATCGTCAGGCCGCGGACCTTCCACTTACGGCGCGTTTGCATGCCG
CCCTGGCTCATGCGATCGCCATCGGAGACGAGGAAGCTGCTGCACAGGCTTGCGACAAGCTGCTGGATACGATCCATCAA
TTCACCCGCGCGACCGTTAGTACCGATTTTTAA

Upstream 100 bases:

>100_bases
TGGACAGGCAGAGCGGCGGTACCTGGAGATTGTTCATGCCGCCTTTCAGGGCACGCTTCCCGATGCCTGATAGCTCAGGT
GTATGGAGTGCGTATGGAGT

Downstream 100 bases:

>100_bases
CCACCGAATGTCCTCGCGTCGCGAAGAGGCATCAACCAACCCTCCGTCGCCTAGCCCGGATATTTCACCAGTGTGCTGAT
CGTGCGGTTGTTGCGGCTGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MYGDEILVISTGGILATSKKIRPTPRSRSDRAPAGGNDLSLTEQAYSQLEEMIVTLKLAPGKLVTEAELSELLGIGRTPI
REALQRLAAQRLVRVVPRRGIAISDIDVKAQLRLLEVRRELERLMCRNAARRASAEERAELGRLAAAFKECAKTGDAEKF
MRIDRAFNELCLVAARNEFTTSAMSLMNSLSRRFWFLHYRQAADLPLTARLHAALAHAIAIGDEEAAAQACDKLLDTIHQ
FTRATVSTDF

Sequences:

>Translated_250_residues
MYGDEILVISTGGILATSKKIRPTPRSRSDRAPAGGNDLSLTEQAYSQLEEMIVTLKLAPGKLVTEAELSELLGIGRTPI
REALQRLAAQRLVRVVPRRGIAISDIDVKAQLRLLEVRRELERLMCRNAARRASAEERAELGRLAAAFKECAKTGDAEKF
MRIDRAFNELCLVAARNEFTTSAMSLMNSLSRRFWFLHYRQAADLPLTARLHAALAHAIAIGDEEAAAQACDKLLDTIHQ
FTRATVSTDF
>Mature_250_residues
MYGDEILVISTGGILATSKKIRPTPRSRSDRAPAGGNDLSLTEQAYSQLEEMIVTLKLAPGKLVTEAELSELLGIGRTPI
REALQRLAAQRLVRVVPRRGIAISDIDVKAQLRLLEVRRELERLMCRNAARRASAEERAELGRLAAAFKECAKTGDAEKF
MRIDRAFNELCLVAARNEFTTSAMSLMNSLSRRFWFLHYRQAADLPLTARLHAALAHAIAIGDEEAAAQACDKLLDTIHQ
FTRATVSTDF

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994961, Length=208, Percent_Identity=27.8846153846154, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081914, Length=225, Percent_Identity=24.4444444444444, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27703; Mature: 27703

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGDEILVISTGGILATSKKIRPTPRSRSDRAPAGGNDLSLTEQAYSQLEEMIVTLKLAP
CCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECC
GKLVTEAELSELLGIGRTPIREALQRLAAQRLVRVVPRRGIAISDIDVKAQLRLLEVRRE
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHH
LERLMCRNAARRASAEERAELGRLAAAFKECAKTGDAEKFMRIDRAFNELCLVAARNEFT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
TSAMSLMNSLSRRFWFLHYRQAADLPLTARLHAALAHAIAIGDEEAAAQACDKLLDTIHQ
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FTRATVSTDF
HHHHHHCCCC
>Mature Secondary Structure
MYGDEILVISTGGILATSKKIRPTPRSRSDRAPAGGNDLSLTEQAYSQLEEMIVTLKLAP
CCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECC
GKLVTEAELSELLGIGRTPIREALQRLAAQRLVRVVPRRGIAISDIDVKAQLRLLEVRRE
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHH
LERLMCRNAARRASAEERAELGRLAAAFKECAKTGDAEKFMRIDRAFNELCLVAARNEFT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
TSAMSLMNSLSRRFWFLHYRQAADLPLTARLHAALAHAIAIGDEEAAAQACDKLLDTIHQ
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
FTRATVSTDF
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]