Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91788742
Identifier: 91788742
GI number: 91788742
Start: 3042817
End: 3043386
Strand: Reverse
Name: 91788742
Synonym: Bpro_2881
Alternate gene names: NA
Gene position: 3043386-3042817 (Counterclockwise)
Preceding gene: 91788743
Following gene: 91788741
Centisome position: 58.52
GC content: 64.39
Gene sequence:
>570_bases ATGGTAGCCCGCGTGCCGTCCCGCATCCCGCGTCAACAACTCGGCGCTTCGATGATCGAAGTGCTGGTCACCATGATCAT CATCGCCTTCGGCCTGCTCGGGATGGCGGGGCTGCAGATGCGCATGCAGAGTTCGGAGATGGAGGCCTACCAGCGCAGCC AGGCGCTTCTGCTGCTCAACGATATGGCCAACCGCATCGCTGCAAACCGCAACAATGCCAGCTTATATGTCATGGGGACC ACGGCGCTAGGTACGGGGATGACCTGTCCCACGGCGACCGCGACCATAGGGCAGCAGGACCTGCGGCAATGGTGCGAAGC CTTGCAGGGGGCCGCCGAGGTGTCCGGCACGGACAAGGTGGGTGCGATGGTCGGCGGCCGCGGATGCATCCAAACCGCCA GCGGCGACTACCTGGTGACCGTGGTATGGCAGGGTCTCACGCCGATTTCGGCACCACCGGCATCCGTCGCTTGCGGCGCC GGCCAGTTCAATGGCGACAGCGCGTCCAGTTGCAAGAACGACCTGTGCCGACGTGCCGTGACCACCTTGGTTCGAGTCGC CACCCTATGA
Upstream 100 bases:
>100_bases CGGCGCCCGGATTCACCATCACGTTCACGGCCATTGGCGGCCAGGCCGAAGATGGCAACCTGACGCTCACCAGCGAAGGG GTGAAGGACCCGGTGGGCAA
Downstream 100 bases:
>100_bases ACAAAACCCTCCGCACGCAGCGCGGCTTCACTTTGGTGGAGTTGATGATTTCGCTGGTCCTCGGATTGCTGATCATCCTG GCTCTCCTCACCATGCTGAT
Product: putative type 4 fimbrial biogenesis related transmembrane protein
Products: NA
Alternate protein names: Type 4 Fimbrial Biogenesis Related Transmembrane Protein; Type 4 Fimbrial Biogenesis Relatedtransmembrane Protein; Type IV Pilus Assembly Protein PilV
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MVARVPSRIPRQQLGASMIEVLVTMIIIAFGLLGMAGLQMRMQSSEMEAYQRSQALLLLNDMANRIAANRNNASLYVMGT TALGTGMTCPTATATIGQQDLRQWCEALQGAAEVSGTDKVGAMVGGRGCIQTASGDYLVTVVWQGLTPISAPPASVACGA GQFNGDSASSCKNDLCRRAVTTLVRVATL
Sequences:
>Translated_189_residues MVARVPSRIPRQQLGASMIEVLVTMIIIAFGLLGMAGLQMRMQSSEMEAYQRSQALLLLNDMANRIAANRNNASLYVMGT TALGTGMTCPTATATIGQQDLRQWCEALQGAAEVSGTDKVGAMVGGRGCIQTASGDYLVTVVWQGLTPISAPPASVACGA GQFNGDSASSCKNDLCRRAVTTLVRVATL >Mature_189_residues MVARVPSRIPRQQLGASMIEVLVTMIIIAFGLLGMAGLQMRMQSSEMEAYQRSQALLLLNDMANRIAANRNNASLYVMGT TALGTGMTCPTATATIGQQDLRQWCEALQGAAEVSGTDKVGAMVGGRGCIQTASGDYLVTVVWQGLTPISAPPASVACGA GQFNGDSASSCKNDLCRRAVTTLVRVATL
Specific function: Unknown
COG id: COG4967
COG function: function code NU; Tfp pilus assembly protein PilV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19802; Mature: 19802
Theoretical pI: Translated: 8.37; Mature: 8.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 9.0 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 9.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVARVPSRIPRQQLGASMIEVLVTMIIIAFGLLGMAGLQMRMQSSEMEAYQRSQALLLLN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DMANRIAANRNNASLYVMGTTALGTGMTCPTATATIGQQDLRQWCEALQGAAEVSGTDKV HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCHH GAMVGGRGCIQTASGDYLVTVVWQGLTPISAPPASVACGAGQFNGDSASSCKNDLCRRAV HHHHCCCCCEECCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH TTLVRVATL HHHHHHHCC >Mature Secondary Structure MVARVPSRIPRQQLGASMIEVLVTMIIIAFGLLGMAGLQMRMQSSEMEAYQRSQALLLLN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DMANRIAANRNNASLYVMGTTALGTGMTCPTATATIGQQDLRQWCEALQGAAEVSGTDKV HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCHH GAMVGGRGCIQTASGDYLVTVVWQGLTPISAPPASVACGAGQFNGDSASSCKNDLCRRAV HHHHCCCCCEECCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH TTLVRVATL HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA