Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is vgb [H]
Identifier: 91788600
GI number: 91788600
Start: 2880678
End: 2881757
Strand: Direct
Name: vgb [H]
Synonym: Bpro_2738
Alternate gene names: 91788600
Gene position: 2880678-2881757 (Clockwise)
Preceding gene: 91788599
Following gene: 91788602
Centisome position: 55.39
GC content: 68.52
Gene sequence:
>1080_bases ATGGCACTGCCAACGCAACCTCAACAAGTACGTATCAGCCGCCGCGCCGCACTGGGCGCAGTGGCGGCACTGCCCGGCCT CTCGGGTATTGCCCTGGGTGGGGTCTTCGCAGGCGCCCTGCTCTCGCCCGCCACCGGGCACGCACAGACAACGGGCACCT CTCGCCTGCAATCCTGGCCGCTCAACACCCCGCGCAGCACAGGCATTCACGACGTGGCGCCCGCGACCGGTGGCGGGGTC TGGTTCTCGGCGCAGCGCAGCGGGCACCTGGGCTGGTTTGACCCGCGCACCGGCAAGTCCGAGCTGATCGCCCTGGGAAG CAATGGCGGCAGTTCGTCGCCGCATGGCGTCATTGCCGGGCCCGACGGCGCAGCCTGGCTGACCGACAGCGGACAAAACG CCATTGCGCGCGTGAGCTGGCCGGCGCGAGAGGTGAAGCTCTTCCCCCTGCCCGCCGGAACACCCTACGCCAACCTCAAC ACCTGCGCCTTTGATGGCGGCGGCGACCTGTGGTTTACCGGGCAAGGCGGCTACGTGGGCAAGGTGGCCGTGCGCACCGG CAAGGTCAGCGTGAAGGAAGCGCCACGCGGGCGCGGGCCCTACGGCATTTGCGCCACTCCAAAGGGCGACGTGTGGTGGT GCTCGCTGGCCGGGTCCTTCATTGCGCAGATAGACCGGAGCACCGGCGAGTCACGCGTCGTTGAACCACCCACACAGCGC CAGGGCGCGCGCCGCGTCTGGTCCGACAGCCGCGGCCGCATCTGGGTGGCCGAGTGGAACAGCGGCAACCTCTCGGTGCA CGACCCGGCATTGGGCCTCGGCCCCAACAGCTGGCGCACCTGGAAAGCACCGGGCGCCAGCCCGCAGATCTACGCCGTGT ATGTAGACGACAAAGACATCGTCTGGACCTCCGAGTGGAGCAACAACGCCATGCTGCGCTTCGACCCGCGCGCCGAGAAG TTCGACGTGATCCCCATGCACCGCCCCGCGGCCAACATCCGCCAGATACTCGGCCGGCCGGGCGAAGTCTGGCTGCCCGA AAGCGGCACGGAGTTTATTTCGGTGATCAGGACGGGGTGA
Upstream 100 bases:
>100_bases AGGTGCACCCTTGCAGCCCTTGCATGCGGCAGCACATTGCCGCCACAATGATCCCGCACGACCTTGTCCAACCAGTCCCG AACGCGCAGGAGAATCTGCC
Downstream 100 bases:
>100_bases ATACCGCGAAAACTACAACGTTGATTTGTCATTGCGGGCTTGACCCGCAATCCATGGACCCCGGATCGAGTCCGGGATGA CAAGTCAGGGGCAAGGGTTT
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: Streptogramin B lyase [H]
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MALPTQPQQVRISRRAALGAVAALPGLSGIALGGVFAGALLSPATGHAQTTGTSRLQSWPLNTPRSTGIHDVAPATGGGV WFSAQRSGHLGWFDPRTGKSELIALGSNGGSSSPHGVIAGPDGAAWLTDSGQNAIARVSWPAREVKLFPLPAGTPYANLN TCAFDGGGDLWFTGQGGYVGKVAVRTGKVSVKEAPRGRGPYGICATPKGDVWWCSLAGSFIAQIDRSTGESRVVEPPTQR QGARRVWSDSRGRIWVAEWNSGNLSVHDPALGLGPNSWRTWKAPGASPQIYAVYVDDKDIVWTSEWSNNAMLRFDPRAEK FDVIPMHRPAANIRQILGRPGEVWLPESGTEFISVIRTG
Sequences:
>Translated_359_residues MALPTQPQQVRISRRAALGAVAALPGLSGIALGGVFAGALLSPATGHAQTTGTSRLQSWPLNTPRSTGIHDVAPATGGGV WFSAQRSGHLGWFDPRTGKSELIALGSNGGSSSPHGVIAGPDGAAWLTDSGQNAIARVSWPAREVKLFPLPAGTPYANLN TCAFDGGGDLWFTGQGGYVGKVAVRTGKVSVKEAPRGRGPYGICATPKGDVWWCSLAGSFIAQIDRSTGESRVVEPPTQR QGARRVWSDSRGRIWVAEWNSGNLSVHDPALGLGPNSWRTWKAPGASPQIYAVYVDDKDIVWTSEWSNNAMLRFDPRAEK FDVIPMHRPAANIRQILGRPGEVWLPESGTEFISVIRTG >Mature_358_residues ALPTQPQQVRISRRAALGAVAALPGLSGIALGGVFAGALLSPATGHAQTTGTSRLQSWPLNTPRSTGIHDVAPATGGGVW FSAQRSGHLGWFDPRTGKSELIALGSNGGSSSPHGVIAGPDGAAWLTDSGQNAIARVSWPAREVKLFPLPAGTPYANLNT CAFDGGGDLWFTGQGGYVGKVAVRTGKVSVKEAPRGRGPYGICATPKGDVWWCSLAGSFIAQIDRSTGESRVVEPPTQRQ GARRVWSDSRGRIWVAEWNSGNLSVHDPALGLGPNSWRTWKAPGASPQIYAVYVDDKDIVWTSEWSNNAMLRFDPRAEKF DVIPMHRPAANIRQILGRPGEVWLPESGTEFISVIRTG
Specific function: Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid [H]
COG id: COG4257
COG function: function code V; Streptogramin lyase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the vgb family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR011217 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38119; Mature: 37988
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPTQPQQVRISRRAALGAVAALPGLSGIALGGVFAGALLSPATGHAQTTGTSRLQSWP CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCC LNTPRSTGIHDVAPATGGGVWFSAQRSGHLGWFDPRTGKSELIALGSNGGSSSPHGVIAG CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEC PDGAAWLTDSGQNAIARVSWPAREVKLFPLPAGTPYANLNTCAFDGGGDLWFTGQGGYVG CCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCEEE KVAVRTGKVSVKEAPRGRGPYGICATPKGDVWWCSLAGSFIAQIDRSTGESRVVEPPTQR EEEEEECCEEEECCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHCCCCCCEEECCCHHH QGARRVWSDSRGRIWVAEWNSGNLSVHDPALGLGPNSWRTWKAPGASPQIYAVYVDDKDI HHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCCE VWTSEWSNNAMLRFDPRAEKFDVIPMHRPAANIRQILGRPGEVWLPESGTEFISVIRTG EEECCCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCCCCEEEEEECC >Mature Secondary Structure ALPTQPQQVRISRRAALGAVAALPGLSGIALGGVFAGALLSPATGHAQTTGTSRLQSWP CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCC LNTPRSTGIHDVAPATGGGVWFSAQRSGHLGWFDPRTGKSELIALGSNGGSSSPHGVIAG CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEC PDGAAWLTDSGQNAIARVSWPAREVKLFPLPAGTPYANLNTCAFDGGGDLWFTGQGGYVG CCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCEEE KVAVRTGKVSVKEAPRGRGPYGICATPKGDVWWCSLAGSFIAQIDRSTGESRVVEPPTQR EEEEEECCEEEECCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHCCCCCCEEECCCHHH QGARRVWSDSRGRIWVAEWNSGNLSVHDPALGLGPNSWRTWKAPGASPQIYAVYVDDKDI HHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCCE VWTSEWSNNAMLRFDPRAEKFDVIPMHRPAANIRQILGRPGEVWLPESGTEFISVIRTG EEECCCCCCCEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA