Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91788599
Identifier: 91788599
GI number: 91788599
Start: 2879902
End: 2880498
Strand: Direct
Name: 91788599
Synonym: Bpro_2737
Alternate gene names: NA
Gene position: 2879902-2880498 (Clockwise)
Preceding gene: 91788593
Following gene: 91788600
Centisome position: 55.38
GC content: 60.8
Gene sequence:
>597_bases ATGACCGAGCATTTCGTAACACCTGGTAAAGATCAAATTGCGCTCCTGGAGCCTTTCGAGCGGCTGGGGCTGGCGCAGGT ACAGGTGGTTTCAACGCCGCAGCAGGCCGGCAAGGCGCTGGAGGAACTCGCAGGCACCGCGGCCCTCGGGTTCGATACCG AATCCAGACCGACCTTTGCCAAAAACGAGGCATCCGACGGACCGCACATCGTCCAGCTGTCCACACTGGAGAAGGCCTAT ATCTTTCAATTGCAGGATGCGGACTGCCGCCGCGCCGTGGCCATGCTGATGGAGTCGCCGGCCATCATCAAGGCCGGCTT CGGCCTGGGGGACGACCGCCGGCGTCTCATCAGCAAATTCGGCGTTGACCCGCAGGGTGTGCTGGACCTGAACACCGTGT TCAGGAAAAAAGGCTACCGCAAGGACATGGGCGTGCGCGGGGCCGTGGCCGTGGTTTTCAACAAGCGGTTCATCAAATCC AGAAAAGCCACCACCTCCAACTGGGCCAACAGCAAGCTGTCCGACGCGCAGATCATCTACGCCGCCAATGACGCCTATGC TGCGCTCAGGGTCTTCATGGCGCTTGAGCTGGACTGA
Upstream 100 bases:
>100_bases GTGACGGAAAAAGTTTGCAGGTGTCGGTGGCGCTGCTTTGTGCTGCTTTGTGCTGCCATGATGTGGGTTGCTCTCTTTCT ATTTTGATGCATGGAACCCT
Downstream 100 bases:
>100_bases CCGCGCAGGGCAAGCCGTGATTTCCGGCGGGATCCAGAGAAGGGCAATCGACAGCACGGTCATCAGCAGAGCCACCGGCA GGTGCACCCTTGCAGCCCTT
Product: 3'-5' exonuclease
Products: NA
Alternate protein names: 3-5' Exonuclease Domain Protein; 3- 5' Exonuclease Domain Protein; 3 Exoribonuclease Family Protein; Exonuclease
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MTEHFVTPGKDQIALLEPFERLGLAQVQVVSTPQQAGKALEELAGTAALGFDTESRPTFAKNEASDGPHIVQLSTLEKAY IFQLQDADCRRAVAMLMESPAIIKAGFGLGDDRRRLISKFGVDPQGVLDLNTVFRKKGYRKDMGVRGAVAVVFNKRFIKS RKATTSNWANSKLSDAQIIYAANDAYAALRVFMALELD
Sequences:
>Translated_198_residues MTEHFVTPGKDQIALLEPFERLGLAQVQVVSTPQQAGKALEELAGTAALGFDTESRPTFAKNEASDGPHIVQLSTLEKAY IFQLQDADCRRAVAMLMESPAIIKAGFGLGDDRRRLISKFGVDPQGVLDLNTVFRKKGYRKDMGVRGAVAVVFNKRFIKS RKATTSNWANSKLSDAQIIYAANDAYAALRVFMALELD >Mature_197_residues TEHFVTPGKDQIALLEPFERLGLAQVQVVSTPQQAGKALEELAGTAALGFDTESRPTFAKNEASDGPHIVQLSTLEKAYI FQLQDADCRRAVAMLMESPAIIKAGFGLGDDRRRLISKFGVDPQGVLDLNTVFRKKGYRKDMGVRGAVAVVFNKRFIKSR KATTSNWANSKLSDAQIIYAANDAYAALRVFMALELD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI110735439, Length=158, Percent_Identity=27.8481012658228, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21724; Mature: 21593
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHFVTPGKDQIALLEPFERLGLAQVQVVSTPQQAGKALEELAGTAALGFDTESRPTFA CCCCCCCCCCCCEEEECHHHHCCCEEEEEECCHHHHHHHHHHHHCCEEECCCCCCCCCCC KNEASDGPHIVQLSTLEKAYIFQLQDADCRRAVAMLMESPAIIKAGFGLGDDRRRLISKF CCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH GVDPQGVLDLNTVFRKKGYRKDMGVRGAVAVVFNKRFIKSRKATTSNWANSKLSDAQIIY CCCCCCEEHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCEEEE AANDAYAALRVFMALELD ECCCHHHHHHHHHHEECC >Mature Secondary Structure TEHFVTPGKDQIALLEPFERLGLAQVQVVSTPQQAGKALEELAGTAALGFDTESRPTFA CCCCCCCCCCCEEEECHHHHCCCEEEEEECCHHHHHHHHHHHHCCEEECCCCCCCCCCC KNEASDGPHIVQLSTLEKAYIFQLQDADCRRAVAMLMESPAIIKAGFGLGDDRRRLISKF CCCCCCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH GVDPQGVLDLNTVFRKKGYRKDMGVRGAVAVVFNKRFIKSRKATTSNWANSKLSDAQIIY CCCCCCEEHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCEEEE AANDAYAALRVFMALELD ECCCHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA