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The map label for this gene is ybhD [H]

Identifier: 91788221

GI number: 91788221

Start: 2451849

End: 2452760

Strand: Direct

Name: ybhD [H]

Synonym: Bpro_2354

Alternate gene names: 91788221

Gene position: 2451849-2452760 (Clockwise)

Preceding gene: 91788217

Following gene: 91788222

Centisome position: 47.15

GC content: 66.89

Gene sequence:

>912_bases
ATGAGAGACCTGGACATGACCACTTTGCGGCTGTTTGCCGCCGTGTGCGAGACGCGCAGCATCGCCCGGGCCGCCGAGCA
GGCCAACATTGTCGGTTCGGCCATCAGCAAGCGGCTGGCGCAGCTGGAAGACACCGTCGGCACGCCGCTGCTGGTGCGTC
GGCGCCGCGGCGTCGAGCCCACACCCGCAGGTGAGAGCCTGCTGGAACACGCGCGCACCATGCTGGCCAGCGCTGAGCAG
ATCGAGCGCGACATGGCCGCCTATGCGCTGGGCGTGCGCGGCCAGGTTCGCATCCTGGCGACGGCATCTGTCATGGCGGA
GTCGCTGGCCGATGATGTGGCGGCCTTTTTGCAGGTACCGGCGCATCACGACATCCAGGTCAGCATGGAGGAGCGAGTCA
GTCCGGACGTGATTCGCGGCATCAAGGAGGGCGTCGCCTCGGTCGGCATCTGCTGGGATGCCGCGGACCTGAGCGGCCTG
CAGTCGCGCGGCTACCGCCGCGACCACCTGGCCATCGTGGTCCATCCGTCGCATCCGCTGGCCCGGCACGAAACCCTGAG
TTTCGAGCAGACGCTGGATTACGAGCATGTCAGCCTGCCGGTGCACAGCGCCGTGCAGATGCTGCTGCAGCGCGCAGCCG
CACTCAAGGGCAAGGCCATCATGCACCGCGTGATCGTGTCCAACTTTGAAGCCGTTTTGCGCGTGGTGCGCGCCAACCTG
GCCATCAGCGTGGTGCCGCGCGAAGTGGCCGAGCCGTATGCCCGCACTTATGGGTTGCGCGTGGTGCCCCTGCTCGATGC
CTGGGCCAGTCGCCGTTTTGCCATCTGCTTTAGAGATGCGGCCGGCCTGTCAGCGGCGGCGCAACTGCTGGTGAGCCATT
TGGCTGCAAAGGAGAGCGAGGGAGCGGGGTAG

Upstream 100 bases:

>100_bases
ATTTCCCGGTTGGTTATAGTTATCAATTTTGGAACCTTCAGCGTTCCGTATCGGAATATCTAAAGCGAACAAGCGAGTCC
TGCGCAACCGGAGCTGCCCC

Downstream 100 bases:

>100_bases
CGGTTTTGTGAGGAAAACAGGCCCAAAAGCGGCAGAGTTCGGCACATTACACCGTTTCATGCAAGCCCCGGTCGTGGCCG
CTGATGCATTCCCGGATACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRDLDMTTLRLFAAVCETRSIARAAEQANIVGSAISKRLAQLEDTVGTPLLVRRRRGVEPTPAGESLLEHARTMLASAEQ
IERDMAAYALGVRGQVRILATASVMAESLADDVAAFLQVPAHHDIQVSMEERVSPDVIRGIKEGVASVGICWDAADLSGL
QSRGYRRDHLAIVVHPSHPLARHETLSFEQTLDYEHVSLPVHSAVQMLLQRAAALKGKAIMHRVIVSNFEAVLRVVRANL
AISVVPREVAEPYARTYGLRVVPLLDAWASRRFAICFRDAAGLSAAAQLLVSHLAAKESEGAG

Sequences:

>Translated_303_residues
MRDLDMTTLRLFAAVCETRSIARAAEQANIVGSAISKRLAQLEDTVGTPLLVRRRRGVEPTPAGESLLEHARTMLASAEQ
IERDMAAYALGVRGQVRILATASVMAESLADDVAAFLQVPAHHDIQVSMEERVSPDVIRGIKEGVASVGICWDAADLSGL
QSRGYRRDHLAIVVHPSHPLARHETLSFEQTLDYEHVSLPVHSAVQMLLQRAAALKGKAIMHRVIVSNFEAVLRVVRANL
AISVVPREVAEPYARTYGLRVVPLLDAWASRRFAICFRDAAGLSAAAQLLVSHLAAKESEGAG
>Mature_303_residues
MRDLDMTTLRLFAAVCETRSIARAAEQANIVGSAISKRLAQLEDTVGTPLLVRRRRGVEPTPAGESLLEHARTMLASAEQ
IERDMAAYALGVRGQVRILATASVMAESLADDVAAFLQVPAHHDIQVSMEERVSPDVIRGIKEGVASVGICWDAADLSGL
QSRGYRRDHLAIVVHPSHPLARHETLSFEQTLDYEHVSLPVHSAVQMLLQRAAALKGKAIMHRVIVSNFEAVLRVVRANL
AISVVPREVAEPYARTYGLRVVPLLDAWASRRFAICFRDAAGLSAAAQLLVSHLAAKESEGAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=23.3449477351916, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI87081904, Length=198, Percent_Identity=28.7878787878788, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787949, Length=250, Percent_Identity=26.8, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=23.8907849829352, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=275, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=25.4295532646048, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32885; Mature: 32885

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLDMTTLRLFAAVCETRSIARAAEQANIVGSAISKRLAQLEDTVGTPLLVRRRRGVEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
TPAGESLLEHARTMLASAEQIERDMAAYALGVRGQVRILATASVMAESLADDVAAFLQVP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCC
AHHDIQVSMEERVSPDVIRGIKEGVASVGICWDAADLSGLQSRGYRRDHLAIVVHPSHPL
CCCCEEECHHHCCCHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCCEEEEEECCCCC
ARHETLSFEQTLDYEHVSLPVHSAVQMLLQRAAALKGKAIMHRVIVSNFEAVLRVVRANL
HHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AISVVPREVAEPYARTYGLRVVPLLDAWASRRFAICFRDAAGLSAAAQLLVSHLAAKESE
HEEECCHHHHHHHHHHCCCEEEHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
GAG
CCC
>Mature Secondary Structure
MRDLDMTTLRLFAAVCETRSIARAAEQANIVGSAISKRLAQLEDTVGTPLLVRRRRGVEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
TPAGESLLEHARTMLASAEQIERDMAAYALGVRGQVRILATASVMAESLADDVAAFLQVP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHCC
AHHDIQVSMEERVSPDVIRGIKEGVASVGICWDAADLSGLQSRGYRRDHLAIVVHPSHPL
CCCCEEECHHHCCCHHHHHHHHHHHHHHHHEECCHHHHHHHHCCCCCCCEEEEEECCCCC
ARHETLSFEQTLDYEHVSLPVHSAVQMLLQRAAALKGKAIMHRVIVSNFEAVLRVVRANL
HHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AISVVPREVAEPYARTYGLRVVPLLDAWASRRFAICFRDAAGLSAAAQLLVSHLAAKESE
HEEECCHHHHHHHHHHCCCEEEHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
GAG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]