Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is recR [H]
Identifier: 91788141
GI number: 91788141
Start: 2362653
End: 2363279
Strand: Direct
Name: recR [H]
Synonym: Bpro_2270
Alternate gene names: 91788141
Gene position: 2362653-2363279 (Clockwise)
Preceding gene: 91788140
Following gene: 91788142
Centisome position: 45.43
GC content: 65.71
Gene sequence:
>627_bases ATGGCTGACTCCAATGCCCTCGAAGGCCTGACCCAGGCGTTGCGCAAGCTGCCGGGGGTGGGGGTCAAGTCGGCTGCGCG CATGGCTTTTCATCTGCTGCAGCACGACAAGCCCGGCGCCCTGCAGATCGCGCGGGCCCTGGAGCATGCGGTGAACAGCG TCAGGCATTGCACCCTGTGCAACACACTGACCGAGCAGGAGGTTTGCGCCACCTGCGCCAATCCGCAACGCGACCGAAGC AAGCTGTGTGTGGTGGAAACCCCCGCGGACCAGGCAGCACTGGAGCGTACGCTGGCCTACAGGGGTCTTTACTTCGTGCT CATGGGCAAGCTCAGCCCGCTGGACGGCATTGGCCCCAACGACATCGGCCTGCAAAAACTGTTTGACCGGGTCGTACCCC GGGACGAGCATGGCGAGCCGCTGCCGCCGGCCTCGCGTGAGGTGCAGGAGGTCATCCTGGCCACCAACTTCACCGCCGAG GGGGAGGCCACGGCGCACGTGATTGCCCAGGCGCTGAAAAGCCGCGGCGTGCAGGTAACGCGCCTGGCCCGAGGCGTTCC CGTAGGCAGTGAACTGGAATACGTGGATTTGGGCACGATTGCCCACGCGCTGGTGGACCGCCGATGA
Upstream 100 bases:
>100_bases TTTCCATTCTGATCGCCACCGTTCTGGCTGAGGCTGCCATTGCAGGCATGTAGCCGGGTATTCCTGCAAACCCAACACCC ACGGCGGACGCGCATTTTCA
Downstream 100 bases:
>100_bases CGGCGGCGATACTTGCAGCTTAAAGCGCGGGCAGGCAAGCCGCTATCATTTTCATAGCCTGCGGGATGCATTGAATAAAA GCTGGGCGAAAGCCGGGAAA
Product: recombination protein RecR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MADSNALEGLTQALRKLPGVGVKSAARMAFHLLQHDKPGALQIARALEHAVNSVRHCTLCNTLTEQEVCATCANPQRDRS KLCVVETPADQAALERTLAYRGLYFVLMGKLSPLDGIGPNDIGLQKLFDRVVPRDEHGEPLPPASREVQEVILATNFTAE GEATAHVIAQALKSRGVQVTRLARGVPVGSELEYVDLGTIAHALVDRR
Sequences:
>Translated_208_residues MADSNALEGLTQALRKLPGVGVKSAARMAFHLLQHDKPGALQIARALEHAVNSVRHCTLCNTLTEQEVCATCANPQRDRS KLCVVETPADQAALERTLAYRGLYFVLMGKLSPLDGIGPNDIGLQKLFDRVVPRDEHGEPLPPASREVQEVILATNFTAE GEATAHVIAQALKSRGVQVTRLARGVPVGSELEYVDLGTIAHALVDRR >Mature_207_residues ADSNALEGLTQALRKLPGVGVKSAARMAFHLLQHDKPGALQIARALEHAVNSVRHCTLCNTLTEQEVCATCANPQRDRSK LCVVETPADQAALERTLAYRGLYFVLMGKLSPLDGIGPNDIGLQKLFDRVVPRDEHGEPLPPASREVQEVILATNFTAEG EATAHVIAQALKSRGVQVTRLARGVPVGSELEYVDLGTIAHALVDRR
Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO [H]
COG id: COG0353
COG function: function code L; Recombinational DNA repair protein (RecF pathway)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1786678, Length=208, Percent_Identity=51.9230769230769, Blast_Score=201, Evalue=2e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR000093 - InterPro: IPR006171 - InterPro: IPR015967 [H]
Pfam domain/function: PF02132 RecR; PF01751 Toprim [H]
EC number: NA
Molecular weight: Translated: 22473; Mature: 22342
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADSNALEGLTQALRKLPGVGVKSAARMAFHLLQHDKPGALQIARALEHAVNSVRHCTLC CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH NTLTEQEVCATCANPQRDRSKLCVVETPADQAALERTLAYRGLYFVLMGKLSPLDGIGPN HHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC DIGLQKLFDRVVPRDEHGEPLPPASREVQEVILATNFTAEGEATAHVIAQALKSRGVQVT CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEH RLARGVPVGSELEYVDLGTIAHALVDRR HHHHCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure ADSNALEGLTQALRKLPGVGVKSAARMAFHLLQHDKPGALQIARALEHAVNSVRHCTLC CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH NTLTEQEVCATCANPQRDRSKLCVVETPADQAALERTLAYRGLYFVLMGKLSPLDGIGPN HHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC DIGLQKLFDRVVPRDEHGEPLPPASREVQEVILATNFTAEGEATAHVIAQALKSRGVQVT CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEH RLARGVPVGSELEYVDLGTIAHALVDRR HHHHCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA