Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is waaA [H]
Identifier: 91787523
GI number: 91787523
Start: 1696607
End: 1697932
Strand: Direct
Name: waaA [H]
Synonym: Bpro_1641
Alternate gene names: 91787523
Gene position: 1696607-1697932 (Clockwise)
Preceding gene: 91787522
Following gene: 91787524
Centisome position: 32.63
GC content: 67.42
Gene sequence:
>1326_bases ATGAGCCAGCTGTTGCTGCGGCTTTATTCGCTGGCCATGGTGCTGGCGCAACCCATGCTGCGTCGCAAGCTGGCGCGGCG CGGCCAGCGCGAGCCCGGCTATCTGACGGCGGTTGAAGAGCGCTTTGGCCACTACACCCAGCCGGCCGAGACTTCTTCCG AACTGGTGTGGGTGCATGCTGTGTCACTCGGGGAAACACGTACCGCGGCCATGCTGCTCAAGGCCTTGCGCGCGCAGTAC CCGGGCCTGCGAATTTTGCTCACGCACGGCACGGCCACCGGCCGCGCCGAGGGTGCGGCGCTGCTGCAGCCCGGCGATGT GCAGGTGTGGCAACCCTGGGACAGCCTGGCTGCCGTGGCGCGTTTTTTCAATCACTTCAGGCCACGGCTGGGCCTGCTGA TGGAAACCGAGATATGGCCCAACACCGTGGCCGCTGCCCGCGCGCGCGCCATGCCGCTGGTGCTCGTCAATGGACGCCTG TCAGACAAATCATTGCAGCAGGCGCTGCGCATCGCGCTGCTGTCTTTGCCGGCCTACGGCGCGCTAGCCGCGGTGTACGC GCAGACCGAAGACGACGCGCGGCGCTTTCGTCAGCTTGGCGCGCCGGTGACCGGCGTGTTTGGCAACCTCAAGTTTGATG CCACGCCCAGCGCCGGCCAGCAGACGCAAGGCCGGGCATGGCGGCAGGCGCTGGCACAGCCGGTGCTGATGTTCGCCAGT TCGCGCGAAGGCGAAGAAGCCGATTTCCTCAAGCAGATAAAGGCTGCGACCCAGGAAAAAGTTGAGCTGTCAGCCATGAG TTCGGCAGCCAATGAATCCGCCAGGGCTTTCCATGCACTGATCGTTCCCCGCCACCCGCAGCGCTTCGACGAAGTGGCGG CCCTGGTGGAGCAGCACGGCCTGCGCGTGTCGCGCCGCTCGCAGTGGACGGGCGGCCCCGCCGACAGCGACGAAGCCCGG CAGGCCGATGTCTGGCTTGGCGACTCCCTGGGCGAGATGGCGCTGTACTACGGCCTCAGCGATGTGGCCCTGCTCGGTGG CAGCTTTGCGCCCCTGGGCGGCCAGAATTTAATCGAGGCCGCAGCCTGCGGCTGCCCGGTGGTGATGGGGCCACACACCT TCAACTTTGCCGAGGCCGCCGAGCTGGCCGAGGCCGAAGGCGCAGCCCTGCGCGTAGCCGACATGCCCGAGGCCGTCCAG GCCGCGTTGGTTTTGGTGAGCGACCTGCCGGCGCTGGCAGCGGCCGTGGATTCCGGCCTGGCGTTCGCGGCCCGCAATCG GGGTGCGGCTGCAAAGACGCTGGATGCGTTGCGCGCCTACTTGTGA
Upstream 100 bases:
>100_bases TGTTTGCGCAACCCACCCCCAGCGTTGATGTCGTGTGGCAGGCCTGGCTGGCTTGCCGGCAGGCCCCTGCGGCGGCGCAT ACGACCATTGTGGCCGCCCC
Downstream 100 bases:
>100_bases GTTGCGTCCCGCTGGGGCCGGTTGTGGGGGCGGGGCAGCGCGAGCCCAGTTGAACATTCCAACATGCAGGCTTTCACGGA TTTTTTATTGCCCCTTGAGT
Product: three-deoxy-D-manno-octulosonic-acid transferase-like protein
Products: NA
Alternate protein names: KDO transferase [H]
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MSQLLLRLYSLAMVLAQPMLRRKLARRGQREPGYLTAVEERFGHYTQPAETSSELVWVHAVSLGETRTAAMLLKALRAQY PGLRILLTHGTATGRAEGAALLQPGDVQVWQPWDSLAAVARFFNHFRPRLGLLMETEIWPNTVAAARARAMPLVLVNGRL SDKSLQQALRIALLSLPAYGALAAVYAQTEDDARRFRQLGAPVTGVFGNLKFDATPSAGQQTQGRAWRQALAQPVLMFAS SREGEEADFLKQIKAATQEKVELSAMSSAANESARAFHALIVPRHPQRFDEVAALVEQHGLRVSRRSQWTGGPADSDEAR QADVWLGDSLGEMALYYGLSDVALLGGSFAPLGGQNLIEAAACGCPVVMGPHTFNFAEAAELAEAEGAALRVADMPEAVQ AALVLVSDLPALAAAVDSGLAFAARNRGAAAKTLDALRAYL
Sequences:
>Translated_441_residues MSQLLLRLYSLAMVLAQPMLRRKLARRGQREPGYLTAVEERFGHYTQPAETSSELVWVHAVSLGETRTAAMLLKALRAQY PGLRILLTHGTATGRAEGAALLQPGDVQVWQPWDSLAAVARFFNHFRPRLGLLMETEIWPNTVAAARARAMPLVLVNGRL SDKSLQQALRIALLSLPAYGALAAVYAQTEDDARRFRQLGAPVTGVFGNLKFDATPSAGQQTQGRAWRQALAQPVLMFAS SREGEEADFLKQIKAATQEKVELSAMSSAANESARAFHALIVPRHPQRFDEVAALVEQHGLRVSRRSQWTGGPADSDEAR QADVWLGDSLGEMALYYGLSDVALLGGSFAPLGGQNLIEAAACGCPVVMGPHTFNFAEAAELAEAEGAALRVADMPEAVQ AALVLVSDLPALAAAVDSGLAFAARNRGAAAKTLDALRAYL >Mature_440_residues SQLLLRLYSLAMVLAQPMLRRKLARRGQREPGYLTAVEERFGHYTQPAETSSELVWVHAVSLGETRTAAMLLKALRAQYP GLRILLTHGTATGRAEGAALLQPGDVQVWQPWDSLAAVARFFNHFRPRLGLLMETEIWPNTVAAARARAMPLVLVNGRLS DKSLQQALRIALLSLPAYGALAAVYAQTEDDARRFRQLGAPVTGVFGNLKFDATPSAGQQTQGRAWRQALAQPVLMFASS REGEEADFLKQIKAATQEKVELSAMSSAANESARAFHALIVPRHPQRFDEVAALVEQHGLRVSRRSQWTGGPADSDEARQ ADVWLGDSLGEMALYYGLSDVALLGGSFAPLGGQNLIEAAACGCPVVMGPHTFNFAEAAELAEAEGAALRVADMPEAVQA ALVLVSDLPALAAAVDSGLAFAARNRGAAAKTLDALRAYL
Specific function: Essential step in lipopolysaccharides biosynthesis. Acts at transfer of 3-deoxy-D-mono octulonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A (lipid IVA). Transfers two molecules of KDO to lipid IVA [H]
COG id: COG1519
COG function: function code M; 3-deoxy-D-manno-octulosonic-acid transferase
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790064, Length=440, Percent_Identity=34.5454545454545, Blast_Score=217, Evalue=1e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 - InterPro: IPR007507 [H]
Pfam domain/function: PF00534 Glycos_transf_1; PF04413 Glycos_transf_N [H]
EC number: 2.-.-.-
Molecular weight: Translated: 47415; Mature: 47284
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQLLLRLYSLAMVLAQPMLRRKLARRGQREPGYLTAVEERFGHYTQPAETSSELVWVHA CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEE VSLGETRTAAMLLKALRAQYPGLRILLTHGTATGRAEGAALLQPGDVQVWQPWDSLAAVA ECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEECCCCCEEECCHHHHHHHH RFFNHFRPRLGLLMETEIWPNTVAAARARAMPLVLVNGRLSDKSLQQALRIALLSLPAYG HHHHHHCHHHCCEEECCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCHH ALAAVYAQTEDDARRFRQLGAPVTGVFGNLKFDATPSAGQQTQGRAWRQALAQPVLMFAS HHHHHHHCCHHHHHHHHHHCCCHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC SREGEEADFLKQIKAATQEKVELSAMSSAANESARAFHALIVPRHPQRFDEVAALVEQHG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHC LRVSRRSQWTGGPADSDEARQADVWLGDSLGEMALYYGLSDVALLGGSFAPLGGQNLIEA CCCCCCCCCCCCCCCCCCHHHCCEEECCCHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHH AACGCPVVMGPHTFNFAEAAELAEAEGAALRVADMPEAVQAALVLVSDLPALAAAVDSGL HHCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCH AFAARNRGAAAKTLDALRAYL HHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure SQLLLRLYSLAMVLAQPMLRRKLARRGQREPGYLTAVEERFGHYTQPAETSSELVWVHA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEE VSLGETRTAAMLLKALRAQYPGLRILLTHGTATGRAEGAALLQPGDVQVWQPWDSLAAVA ECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEECCCCCEEECCHHHHHHHH RFFNHFRPRLGLLMETEIWPNTVAAARARAMPLVLVNGRLSDKSLQQALRIALLSLPAYG HHHHHHCHHHCCEEECCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCHH ALAAVYAQTEDDARRFRQLGAPVTGVFGNLKFDATPSAGQQTQGRAWRQALAQPVLMFAS HHHHHHHCCHHHHHHHHHHCCCHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC SREGEEADFLKQIKAATQEKVELSAMSSAANESARAFHALIVPRHPQRFDEVAALVEQHG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHC LRVSRRSQWTGGPADSDEARQADVWLGDSLGEMALYYGLSDVALLGGSFAPLGGQNLIEA CCCCCCCCCCCCCCCCCCHHHCCEEECCCHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHH AACGCPVVMGPHTFNFAEAAELAEAEGAALRVADMPEAVQAALVLVSDLPALAAAVDSGL HHCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCH AFAARNRGAAAKTLDALRAYL HHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]