Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is ttuD [H]
Identifier: 91787329
GI number: 91787329
Start: 1482281
End: 1483597
Strand: Direct
Name: ttuD [H]
Synonym: Bpro_1434
Alternate gene names: 91787329
Gene position: 1482281-1483597 (Clockwise)
Preceding gene: 91787328
Following gene: 91787330
Centisome position: 28.5
GC content: 67.05
Gene sequence:
>1317_bases ATGACCGCACCCAACCCCGCCTCCCAGCCGCGCCAGTTTCTGGAGCATCTCTACCACGCGGCAGTGCAACGCGCGCTGCC TTTGCACAACACGGCGGCGTATTTACCCAAACCACCCAAGGGCCGAACCATCGTCCTGGGTGCCGGCAAGGCCGGGGGTT CCATGGTGCAGGCGGTCGAGGCCCTCTGGCCCGCTGACGCGCCGCTGGAGGGGCTGGTGGTCACGCGCTATCACCATATT CCACCGCGGCCTGCGGGTTTGAAGCAACGCATAGAACTGGTCGAGGCGGCGCACCCGGTGCCGGATGCGGCGGGCCTGGC GGCTGCGCAGCGCATCCTCGCCATGACGCAGGGCCTGACTGCCGACGACCTGGTGCTGTGCCTGATTTCCGGTGGCGGCT CGTCTCTCCTGACATTGCCCGCCGAGGGCCTCACGCTGGAAGACAAGCAGCGCATCAACAAGGACCTGCTGAACAGCGGC GCCAACATTGGCGAGATGAATTGCGTGCGCAAGCACCTGTCGCGCATCAAGGGCGGGCGGCTGGCCGCGGCCTGTGCGCC GGCGCGCGTGATCACGCTCACCATCAGCGACGTGCCCGGCGATGACCCCTCCATCATTGCCAGCGGCCCGACCGTGCCCG ATGCCAGCACCTGCGCCGAGGCTGTGGCCATCCTCGCGCGCTACGGCATCGCGATCCCGGGCGGGCTCATGAGCCTGCTG GAGCAGGGCGCGCTCGAAACGCCCAAGCCCGGCGATGCGGCCTTCAACGGCCATGAGGTCCACATGATTGCCACACCGCA GCAAAGCCTCGAAGCCGCCGCCGCCGTTGCCAGGGATGCGGGGCTGACGGCCTACATCCTCAGCGATGAGATGGAAGGCG AGTCGCGCGAAGTCGGCAAGGTGCATGCGGCACTGGCCCGCGCGGTGGCGCTCAAGGGCCAGCCTTTCCAGAAACCTTGC GTGATTCTGAGCGGTGGCGAAACCACGGTCACCATCAAAAAGCAGCCCGATGGCACCCCCAAAGGCAGGGGCGGGCGGGC CGGCGAATTCTGCATGGGGCTGGCGCTGGGGCTGCAGGGGCAGGCGGGCGTCTACGCGCTGGCCGCAGACACCGATGGCA TTGACGGTGTGGAAGACAACGCGGGCGCGTTCGTCGCCCCCGACACGCTGGAACGGGCGCTGGCCAAGGGCATGAAGCTG AACCGCTACCTGGACCGCAACGATGCTTATGGCTACTTTGAGCCTCTGGGGGATCTGGTCATCACGGGGCCGACGAACAC CAATGTCAATGATTTCCGGGCGATCCTGGTGCTGTAG
Upstream 100 bases:
>100_bases GTTACGGCGGCACAATGACGGTCTGGGCGGGACAGCGGGCAGTGCCAGAAGCAGCGCTGTTCCATAAACTGCCTTCCAAT AACCCGCAAGAGACATCCGA
Downstream 100 bases:
>100_bases CCCCGTGCAGCGGGGCTTCCTGGCCGGTGCCGAGCCGCCTCAAAGCGGCGAGCCTTGCAGGCCGCGCTACTGCGAGACGC AGTGGCTCTTCGTGCCGTCC
Product: hydroxypyruvate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MTAPNPASQPRQFLEHLYHAAVQRALPLHNTAAYLPKPPKGRTIVLGAGKAGGSMVQAVEALWPADAPLEGLVVTRYHHI PPRPAGLKQRIELVEAAHPVPDAAGLAAAQRILAMTQGLTADDLVLCLISGGGSSLLTLPAEGLTLEDKQRINKDLLNSG ANIGEMNCVRKHLSRIKGGRLAAACAPARVITLTISDVPGDDPSIIASGPTVPDASTCAEAVAILARYGIAIPGGLMSLL EQGALETPKPGDAAFNGHEVHMIATPQQSLEAAAAVARDAGLTAYILSDEMEGESREVGKVHAALARAVALKGQPFQKPC VILSGGETTVTIKKQPDGTPKGRGGRAGEFCMGLALGLQGQAGVYALAADTDGIDGVEDNAGAFVAPDTLERALAKGMKL NRYLDRNDAYGYFEPLGDLVITGPTNTNVNDFRAILVL
Sequences:
>Translated_438_residues MTAPNPASQPRQFLEHLYHAAVQRALPLHNTAAYLPKPPKGRTIVLGAGKAGGSMVQAVEALWPADAPLEGLVVTRYHHI PPRPAGLKQRIELVEAAHPVPDAAGLAAAQRILAMTQGLTADDLVLCLISGGGSSLLTLPAEGLTLEDKQRINKDLLNSG ANIGEMNCVRKHLSRIKGGRLAAACAPARVITLTISDVPGDDPSIIASGPTVPDASTCAEAVAILARYGIAIPGGLMSLL EQGALETPKPGDAAFNGHEVHMIATPQQSLEAAAAVARDAGLTAYILSDEMEGESREVGKVHAALARAVALKGQPFQKPC VILSGGETTVTIKKQPDGTPKGRGGRAGEFCMGLALGLQGQAGVYALAADTDGIDGVEDNAGAFVAPDTLERALAKGMKL NRYLDRNDAYGYFEPLGDLVITGPTNTNVNDFRAILVL >Mature_437_residues TAPNPASQPRQFLEHLYHAAVQRALPLHNTAAYLPKPPKGRTIVLGAGKAGGSMVQAVEALWPADAPLEGLVVTRYHHIP PRPAGLKQRIELVEAAHPVPDAAGLAAAQRILAMTQGLTADDLVLCLISGGGSSLLTLPAEGLTLEDKQRINKDLLNSGA NIGEMNCVRKHLSRIKGGRLAAACAPARVITLTISDVPGDDPSIIASGPTVPDASTCAEAVAILARYGIAIPGGLMSLLE QGALETPKPGDAAFNGHEVHMIATPQQSLEAAAAVARDAGLTAYILSDEMEGESREVGKVHAALARAVALKGQPFQKPCV ILSGGETTVTIKKQPDGTPKGRGGRAGEFCMGLALGLQGQAGVYALAADTDGIDGVEDNAGAFVAPDTLERALAKGMKLN RYLDRNDAYGYFEPLGDLVITGPTNTNVNDFRAILVL
Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]
COG id: COG2379
COG function: function code G; Putative glycerate kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31543063, Length=395, Percent_Identity=33.1645569620253, Blast_Score=170, Evalue=2e-42, Organism=Caenorhabditis elegans, GI193205461, Length=422, Percent_Identity=27.0142180094787, Blast_Score=139, Evalue=3e-33, Organism=Drosophila melanogaster, GI19920578, Length=435, Percent_Identity=29.1954022988506, Blast_Score=128, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007835 [H]
Pfam domain/function: PF05161 MOFRL [H]
EC number: =1.1.1.81 [H]
Molecular weight: Translated: 45538; Mature: 45407
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPNPASQPRQFLEHLYHAAVQRALPLHNTAAYLPKPPKGRTIVLGAGKAGGSMVQAVE CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH ALWPADAPLEGLVVTRYHHIPPRPAGLKQRIELVEAAHPVPDAAGLAAAQRILAMTQGLT HHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC ADDLVLCLISGGGSSLLTLPAEGLTLEDKQRINKDLLNSGANIGEMNCVRKHLSRIKGGR CCCEEEEEEECCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC LAAACAPARVITLTISDVPGDDPSIIASGPTVPDASTCAEAVAILARYGIAIPGGLMSLL EEEECCCCEEEEEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH EQGALETPKPGDAAFNGHEVHMIATPQQSLEAAAAVARDAGLTAYILSDEMEGESREVGK HHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH VHAALARAVALKGQPFQKPCVILSGGETTVTIKKQPDGTPKGRGGRAGEFCMGLALGLQG HHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC QAGVYALAADTDGIDGVEDNAGAFVAPDTLERALAKGMKLNRYLDRNDAYGYFEPLGDLV CCCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCEE ITGPTNTNVNDFRAILVL EECCCCCCCCCEEEEEEC >Mature Secondary Structure TAPNPASQPRQFLEHLYHAAVQRALPLHNTAAYLPKPPKGRTIVLGAGKAGGSMVQAVE CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH ALWPADAPLEGLVVTRYHHIPPRPAGLKQRIELVEAAHPVPDAAGLAAAQRILAMTQGLT HHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC ADDLVLCLISGGGSSLLTLPAEGLTLEDKQRINKDLLNSGANIGEMNCVRKHLSRIKGGR CCCEEEEEEECCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC LAAACAPARVITLTISDVPGDDPSIIASGPTVPDASTCAEAVAILARYGIAIPGGLMSLL EEEECCCCEEEEEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH EQGALETPKPGDAAFNGHEVHMIATPQQSLEAAAAVARDAGLTAYILSDEMEGESREVGK HHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH VHAALARAVALKGQPFQKPCVILSGGETTVTIKKQPDGTPKGRGGRAGEFCMGLALGLQG HHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC QAGVYALAADTDGIDGVEDNAGAFVAPDTLERALAKGMKLNRYLDRNDAYGYFEPLGDLV CCCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCEE ITGPTNTNVNDFRAILVL EECCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7592429 [H]