Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is olpB [H]
Identifier: 91787330
GI number: 91787330
Start: 1483805
End: 1485106
Strand: Direct
Name: olpB [H]
Synonym: Bpro_1435
Alternate gene names: 91787330
Gene position: 1483805-1485106 (Clockwise)
Preceding gene: 91787329
Following gene: 91787342
Centisome position: 28.53
GC content: 67.43
Gene sequence:
>1302_bases ATGTCCAACGGTAAAAACACATCGCCACCGGCTGGCGCCCACGATAAGGCTTCGATCGCGAGCGCGATCGACAAGGTCAA CCGGCAGGTCAAGGCGCTGCGGACTTTCGATGTCTCGGTCGCGAAGAATGGATGGGACTCGACCATGGATGCCTTGCAAA AGAAAGTCAACGCCATCCTCGCCGACAGCCTCGGCATGGGCACGCCTGAGTACAGGCAATATGCCGTGGCGACGCAGGAC TTCCTGCTGGATACGACTTTTGGTGACCGCTACACGGTCGACGAGCGCAAGCAAAGAGTCAAGCATGGGGTCGATCGGGC CATCGCCAACCTGAATGCGACCAAGAAGCTGTTGACGGACCGCCTGGAGGGCCGCGCCGCTGCCGCGCCGAAGGCTGCCC CGGCTGCTGAGGTGAAGCCGCCGCCAGCGCCGGCACCGGCAGCAGCGCCAGCACCAGCACCAGCACCAGCACCAGCACCA GCACCAGCACCAGCACCAGCGCCAGCGCCAGCACCAGCGCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGC ACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCGGCACCAGCACCGGCACCAGCACCAGCGCCAGCACCGGCAC CGGCACCAGCGCCAGCACCGGCACCAGCACCAGCACCAGCGCCAGCGCCAGCACCAGCACCAGCACCAGCGCCAGCACCA GCACCAGCACCAGCACCAGCGCCAGCACCGGCACCGGCACCGGCACCAGCGCCAGCACCAGCGCCAGCGCCGGCACCGGC ACCGCCGCCGGCCCCGGCACCGACGCCGGCCCCGGCACCGACGCCTTCAGTTCCCCCTGTTACCATGATGCCCATGTCCA AGGCCGATCCCTCATCCATCACAGCCCAGCAAGCCGTTCCCGGCACACGCGTGGCCGTCCTTGGCTGGGGCGGCGACGCT GCGGGCCAGGCGTGCGAGTTCATGGAGCAGCTGGGGCTGGAGGCGGCGGTACTCGACACCGTCTCTGTCGATCAACTTGA TGCTTTGCGCAATGTGGCGTTCCTGCTGCTCCTGCCGGGGGAAGAGCCCGAGGCACCGGCAGCCATGCTGGCCATCGGAT TCATGCTTGCCGTACTCGGCCGCAGTCGCATCGTCTGCCTGCTGTCCGACCAGGAGGCATTGCCGGACGCCTTGAAGGGC GCAACACGTATCACGGTCGATGAGGCGGGCTTGTGGCGGCTGCTGCTGGCGCGCGAGATGAAGCGGGCAGGCCTGGACGT GGACCTGAACCGCGCCATCTAA
Upstream 100 bases:
>100_bases CGCAGGCAGGCTTGGAGCCGCGGCACTCAGCCCCCTCGGGGGCCATAAAGTCTGCGTCATGGACGCGTTAAAGTTCAGGC TGGTTGCATAAGGAGTCTGC
Downstream 100 bases:
>100_bases GAAATAAGTTGCACATTTTGCTCGCCAGCTTCGGGCGCGCTGCGTTGTTGCGACTCGCTTGTGTGGCTTGGCCACACGGC GCTCCCCGCGCCTGGCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Outer layer protein B; S-layer protein 1 [H]
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MSNGKNTSPPAGAHDKASIASAIDKVNRQVKALRTFDVSVAKNGWDSTMDALQKKVNAILADSLGMGTPEYRQYAVATQD FLLDTTFGDRYTVDERKQRVKHGVDRAIANLNATKKLLTDRLEGRAAAAPKAAPAAEVKPPPAPAPAAAPAPAPAPAPAP APAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP APAPAPAPAPAPAPAPAPAPAPAPAPAPPPAPAPTPAPAPTPSVPPVTMMPMSKADPSSITAQQAVPGTRVAVLGWGGDA AGQACEFMEQLGLEAAVLDTVSVDQLDALRNVAFLLLLPGEEPEAPAAMLAIGFMLAVLGRSRIVCLLSDQEALPDALKG ATRITVDEAGLWRLLLAREMKRAGLDVDLNRAI
Sequences:
>Translated_433_residues MSNGKNTSPPAGAHDKASIASAIDKVNRQVKALRTFDVSVAKNGWDSTMDALQKKVNAILADSLGMGTPEYRQYAVATQD FLLDTTFGDRYTVDERKQRVKHGVDRAIANLNATKKLLTDRLEGRAAAAPKAAPAAEVKPPPAPAPAAAPAPAPAPAPAP APAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP APAPAPAPAPAPAPAPAPAPAPAPAPAPPPAPAPTPAPAPTPSVPPVTMMPMSKADPSSITAQQAVPGTRVAVLGWGGDA AGQACEFMEQLGLEAAVLDTVSVDQLDALRNVAFLLLLPGEEPEAPAAMLAIGFMLAVLGRSRIVCLLSDQEALPDALKG ATRITVDEAGLWRLLLAREMKRAGLDVDLNRAI >Mature_432_residues SNGKNTSPPAGAHDKASIASAIDKVNRQVKALRTFDVSVAKNGWDSTMDALQKKVNAILADSLGMGTPEYRQYAVATQDF LLDTTFGDRYTVDERKQRVKHGVDRAIANLNATKKLLTDRLEGRAAAAPKAAPAAEVKPPPAPAPAAAPAPAPAPAPAPA PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA PAPAPAPAPAPAPAPAPAPAPAPAPAPPPAPAPTPAPAPTPSVPPVTMMPMSKADPSSITAQQAVPGTRVAVLGWGGDAA GQACEFMEQLGLEAAVLDTVSVDQLDALRNVAFLLLLPGEEPEAPAAMLAIGFMLAVLGRSRIVCLLSDQEALPDALKGA TRITVDEAGLWRLLLAREMKRAGLDVDLNRAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall, S-layer [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 SLH (S-layer homology) domains [H]
Homologues:
Organism=Homo sapiens, GI32483416, Length=150, Percent_Identity=34, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24654378, Length=181, Percent_Identity=51.3812154696133, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI24639970, Length=101, Percent_Identity=46.5346534653465, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008965 - InterPro: IPR002102 - InterPro: IPR018452 - InterPro: IPR001119 [H]
Pfam domain/function: PF00963 Cohesin; PF00395 SLH [H]
EC number: NA
Molecular weight: Translated: 43016; Mature: 42884
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNGKNTSPPAGAHDKASIASAIDKVNRQVKALRTFDVSVAKNGWDSTMDALQKKVNAIL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH ADSLGMGTPEYRQYAVATQDFLLDTTFGDRYTVDERKQRVKHGVDRAIANLNATKKLLTD HHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLEGRAAAAPKAAPAAEVKPPPAPAPAAAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP HHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAPAPAPAPAPAPAPAPAPAPAPAPAPPPAPAPTPAPAPTPSVPPVTMMPMSKADPSSI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHH TAQQAVPGTRVAVLGWGGDAAGQACEFMEQLGLEAAVLDTVSVDQLDALRNVAFLLLLPG HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEHHHHCCHHHHHHHHHCEEEEEECC EEPEAPAAMLAIGFMLAVLGRSRIVCLLSDQEALPDALKGATRITVDEAGLWRLLLAREM CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCEEEEECCCHHHHHHHHHHH KRAGLDVDLNRAI HHCCCCCCHHCCC >Mature Secondary Structure SNGKNTSPPAGAHDKASIASAIDKVNRQVKALRTFDVSVAKNGWDSTMDALQKKVNAIL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH ADSLGMGTPEYRQYAVATQDFLLDTTFGDRYTVDERKQRVKHGVDRAIANLNATKKLLTD HHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLEGRAAAAPKAAPAAEVKPPPAPAPAAAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP HHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAPAPAPAPAPAPAPAPAPAPAPAPAPPPAPAPTPAPAPTPSVPPVTMMPMSKADPSSI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHH TAQQAVPGTRVAVLGWGGDAAGQACEFMEQLGLEAAVLDTVSVDQLDALRNVAFLLLLPG HHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCEEHHHHCCHHHHHHHHHCEEEEEECC EEPEAPAAMLAIGFMLAVLGRSRIVCLLSDQEALPDALKGATRITVDEAGLWRLLLAREM CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCEEEEECCCHHHHHHHHHHH KRAGLDVDLNRAI HHCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8458832 [H]