Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is ycjN [C]
Identifier: 91787155
GI number: 91787155
Start: 1302649
End: 1303977
Strand: Direct
Name: ycjN [C]
Synonym: Bpro_1258
Alternate gene names: 91787155
Gene position: 1302649-1303977 (Clockwise)
Preceding gene: 91787154
Following gene: 91787156
Centisome position: 25.05
GC content: 65.39
Gene sequence:
>1329_bases ATGACAGAGTTCAACCGTCGCAAGTTCCTCGAAAGCTCGGCCGGCGTCGTCGCCGCCGCCACGGTCGGCACCGGGGCCGC GGTGTTTGCGCCCGCGGTCCACGCGCAGGCGCTTGCGTTCAAGCCCGAGAAGGGCGCCAAGCTTCGCGTGCTGCGCTGGA GCCGTTTCGTGCAGGGCGACATCGACGCCTACATGGCCAACGTCAAGAAGTTCACCGAGAAGACCGGCATCGAGGTGCGG GTCGACAACGAAGGCTGGGAAGACGTGCGCCCGAAGGCCGCGGTGGCCGCGAACACCGGCGCCGGGCCCGACATCATCCT GTCGACTAACGACGACGCCAACCTGTACCCCGAGAAGCTGCTCGACGTGACCGACCTGGCCACCTACCTGGGCAAGAAGT ACGAGGGCTGGTATCCGGCGTGCGAGGCGTATTTGCGCCCCGATGGCAAGAAGTGGATCGGCATCGGCCTCGGTGCCGCC GGCGCGATGCTGGTCTACCGCCAGAGCCACGTGAAGGCGGCCGGCTTCGACACCTTCCCGAAAGACACGGCCGGCTTCCT GGCCCTGCTCAAGGGGCTGAAGGAGAAGGGCACGCCGGCCGGCATGGCGCTGGGCAACGCCACCGGCGACGGCCTGTGGA CCAACTGGCTGATCTGGTCGCACGGCGGCAAGCTCGTCGACAAAGACAACAAGGTTGTGATCGACAGCCCCGAGACGATC AAGGCGCTCGAGTACGGGAAGGAGATGTACGCGAACTTCGTTCCCGGCACCCTGTCGTGGCTCGATCCGAACAACAACAA GGCCTTCCTCGACAGCCAGATCAGCCTGACCAACAACGGCATCTCGATCTACTACGCGACCAAGAACGCGACCGACCAGA AGGTCAAGGACCTCAAGGAAGACGTTTACCACGCCCAGTACCCGGTCGGCCCGGTGGGGGTGCCGACCGAGTCGCACCTG TTCTTCAACCAGATGATCATGAAGTACACCAAGTACCCGCAGGCCGCCAAGGAGTTCCTGCGCTTCATGATGGAGCAGGA ACAGTTCGACCCATGGCTCACGGCGGCCGGCGGCTACATCGCCCCGCCGCTGGCGGCGTACGCGAAGTCGGCGATCTGGA CCTCGGACCCGAAGCACACGCCGTACCGCGATTGCGTGAAGAACCTGCGCCCGGCAGGCTACGCCGGCAAGCTCGGCTAC GCGTCGGCGGGTGCCGCCGCCGACTTCATCGTCGTCAATATGGTGGCCGAGGCGGCGAGCGGCTCGAAGACGCCGAAGGA AGCGGCCGAGCGGGCGCAGAAGCGCGCCGAGCGTTACTACAAAGTCTGA
Upstream 100 bases:
>100_bases ACCTGTTCGATGCGAGCACCGGCCAGCGCCTCGCGGCCTGACCGCGCTTGATGCCTTTTTCCCACCTCAATCCACGACTG ATCACAGAAGGAGACAAGCC
Downstream 100 bases:
>100_bases TGGTGCGCGACACCTTCGATGCGGCACCATCTCGCCGCGTTCGAACGTCACGCCGCCTGAACGGCGGGCGTGATGTTCAA CTTGGCGCGGTTGCGCGGAC
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: Sugar ABC Transporter Periplasmic Protein; Sugar ABC Transporter
Number of amino acids: Translated: 442; Mature: 441
Protein sequence:
>442_residues MTEFNRRKFLESSAGVVAAATVGTGAAVFAPAVHAQALAFKPEKGAKLRVLRWSRFVQGDIDAYMANVKKFTEKTGIEVR VDNEGWEDVRPKAAVAANTGAGPDIILSTNDDANLYPEKLLDVTDLATYLGKKYEGWYPACEAYLRPDGKKWIGIGLGAA GAMLVYRQSHVKAAGFDTFPKDTAGFLALLKGLKEKGTPAGMALGNATGDGLWTNWLIWSHGGKLVDKDNKVVIDSPETI KALEYGKEMYANFVPGTLSWLDPNNNKAFLDSQISLTNNGISIYYATKNATDQKVKDLKEDVYHAQYPVGPVGVPTESHL FFNQMIMKYTKYPQAAKEFLRFMMEQEQFDPWLTAAGGYIAPPLAAYAKSAIWTSDPKHTPYRDCVKNLRPAGYAGKLGY ASAGAAADFIVVNMVAEAASGSKTPKEAAERAQKRAERYYKV
Sequences:
>Translated_442_residues MTEFNRRKFLESSAGVVAAATVGTGAAVFAPAVHAQALAFKPEKGAKLRVLRWSRFVQGDIDAYMANVKKFTEKTGIEVR VDNEGWEDVRPKAAVAANTGAGPDIILSTNDDANLYPEKLLDVTDLATYLGKKYEGWYPACEAYLRPDGKKWIGIGLGAA GAMLVYRQSHVKAAGFDTFPKDTAGFLALLKGLKEKGTPAGMALGNATGDGLWTNWLIWSHGGKLVDKDNKVVIDSPETI KALEYGKEMYANFVPGTLSWLDPNNNKAFLDSQISLTNNGISIYYATKNATDQKVKDLKEDVYHAQYPVGPVGVPTESHL FFNQMIMKYTKYPQAAKEFLRFMMEQEQFDPWLTAAGGYIAPPLAAYAKSAIWTSDPKHTPYRDCVKNLRPAGYAGKLGY ASAGAAADFIVVNMVAEAASGSKTPKEAAERAQKRAERYYKV >Mature_441_residues TEFNRRKFLESSAGVVAAATVGTGAAVFAPAVHAQALAFKPEKGAKLRVLRWSRFVQGDIDAYMANVKKFTEKTGIEVRV DNEGWEDVRPKAAVAANTGAGPDIILSTNDDANLYPEKLLDVTDLATYLGKKYEGWYPACEAYLRPDGKKWIGIGLGAAG AMLVYRQSHVKAAGFDTFPKDTAGFLALLKGLKEKGTPAGMALGNATGDGLWTNWLIWSHGGKLVDKDNKVVIDSPETIK ALEYGKEMYANFVPGTLSWLDPNNNKAFLDSQISLTNNGISIYYATKNATDQKVKDLKEDVYHAQYPVGPVGVPTESHLF FNQMIMKYTKYPQAAKEFLRFMMEQEQFDPWLTAAGGYIAPPLAAYAKSAIWTSDPKHTPYRDCVKNLRPAGYAGKLGYA SAGAAADFIVVNMVAEAASGSKTPKEAAERAQKRAERYYKV
Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Ycjnop. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasmic (Potential) [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48315; Mature: 48184
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEFNRRKFLESSAGVVAAATVGTGAAVFAPAVHAQALAFKPEKGAKLRVLRWSRFVQGD CCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHEEECCCCCCEEEEEEHHHHHHHH IDAYMANVKKFTEKTGIEVRVDNEGWEDVRPKAAVAANTGAGPDIILSTNDDANLYPEKL HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCHHHH LDVTDLATYLGKKYEGWYPACEAYLRPDGKKWIGIGLGAAGAMLVYRQSHVKAAGFDTFP HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEEECCCHHHEEEEHHHCCCCCCCCCCC KDTAGFLALLKGLKEKGTPAGMALGNATGDGLWTNWLIWSHGGKLVDKDNKVVIDSPETI CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCCCEEEECCCEEEECCCHHH KALEYGKEMYANFVPGTLSWLDPNNNKAFLDSQISLTNNGISIYYATKNATDQKVKDLKE HHHHHHHHHHHHCCCCEEEEECCCCCCEEEECEEEEECCCEEEEEEECCCCHHHHHHHHH DVYHAQYPVGPVGVPTESHLFFNQMIMKYTKYPQAAKEFLRFMMEQEQFDPWLTAAGGYI HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHCCCCCCC APPLAAYAKSAIWTSDPKHTPYRDCVKNLRPAGYAGKLGYASAGAAADFIVVNMVAEAAS CCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC GSKTPKEAAERAQKRAERYYKV CCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TEFNRRKFLESSAGVVAAATVGTGAAVFAPAVHAQALAFKPEKGAKLRVLRWSRFVQGD CCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHEEECCCCCCEEEEEEHHHHHHHH IDAYMANVKKFTEKTGIEVRVDNEGWEDVRPKAAVAANTGAGPDIILSTNDDANLYPEKL HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCHHHH LDVTDLATYLGKKYEGWYPACEAYLRPDGKKWIGIGLGAAGAMLVYRQSHVKAAGFDTFP HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEEECCCHHHEEEEHHHCCCCCCCCCCC KDTAGFLALLKGLKEKGTPAGMALGNATGDGLWTNWLIWSHGGKLVDKDNKVVIDSPETI CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEECCCCEEEECCCEEEECCCHHH KALEYGKEMYANFVPGTLSWLDPNNNKAFLDSQISLTNNGISIYYATKNATDQKVKDLKE HHHHHHHHHHHHCCCCEEEEECCCCCCEEEECEEEEECCCEEEEEEECCCCHHHHHHHHH DVYHAQYPVGPVGVPTESHLFFNQMIMKYTKYPQAAKEFLRFMMEQEQFDPWLTAAGGYI HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHCCCCCCC APPLAAYAKSAIWTSDPKHTPYRDCVKNLRPAGYAGKLGYASAGAAADFIVVNMVAEAAS CCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC GSKTPKEAAERAQKRAERYYKV CCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA