Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is phbC [H]
Identifier: 91787099
GI number: 91787099
Start: 1243659
End: 1245413
Strand: Direct
Name: phbC [H]
Synonym: Bpro_1202
Alternate gene names: 91787099
Gene position: 1243659-1245413 (Clockwise)
Preceding gene: 91787095
Following gene: 91787102
Centisome position: 23.92
GC content: 66.72
Gene sequence:
>1755_bases ATGGCGCTTTCCAATCCGCGTCCCGAGGGGCAGCACGCACTGCCTCCCATGGACGTTCCCCTCAAGCTCTGGCTGGCCCG GCAGGCACACGGCATCTCGCCGGCGTCGCTTACCCTGGCCTATACCGACTGGCTCAGCCACCTGCTGGTTTCTCCGTCGA AGCAGGCCGAGCTGGGCGCCAGCGCCCTGCGCAAGTGGCTGCTGTGGCTGCAGTACGCGCCGCAGCCCTGGCAACAGGAT CGCCCCGTGAGCGTGGAGTCCCCGTCGCAGGACAAGCGCTTTTCGCGGCCCGAGTGGCAGGCGCCGCCGTTCAACGTTCT GGCGCAGGCCTTTTTGCAGCAGCAGCAGTGGTGGGCCGAGGCCATGACTGGCGTTCGGGGTGTGTCCCGGCACCATGAGG AGGTGGCAGCCTTCATCACCCGCCAGTGGCTGGACATGCTGTCGCCTTCCAATTTCATCGCCACCAATCCCCAGGTCCTG AAGGAGACGCTGGCCAATGGCGGCGTCAACCTTGCCACCGGGCTGGCCAACTGGTCGCGCGATGCGGTCGCCGTCCTCAC CGATGGCAAGCCGCGCGGCGTCGAGGCCTTCGCGCCCGGACAGGGCGTGGCGCTGACGCCGGGCAAGGTGGTGTTCAGAA ACCACCTGATCGAGCTGATCCAGTACGAGCCCGTCACGGCCGAGGTGGACACCGAGCCCGTGCTCATTGTCCCGTCATGG ATCATGAAGTACTACATCCTCGACCTGACGCCCGACGATTCGCTGGTCAAATACATGGTGGCGCAGGGGCACACCGTCTT CATGATTTCATGGCGGAACCCCGACAGCGGTGATCGGGACCTTGGCATGGATGACTACCTGGAGCTGGGGGTGATGGCGG CCCTGCAGGCTGTGCGCTCAGTGCGGCCACGTGCGCGTATCCACGCGATGGGCTACTGCCTGGGCGGAACACTGCTGGCC ATCGCGGCAGCGGCCCTGGCCGGCAGCAGCCCCAACCTGCTGAAGACGGTGACGCTGCTGGCGGCGCAGGCCGATTTCCA CGAGCCTGGCGAGCTGGGGCTGTTCATCGACGAGAGCCAGATCGCGTTTGTCGAAGACCTGATGGCCGAGTGGGGTTACC TCGACGAGCGGCAGATGGCGGGTGCCTTCGCGCTGATCAACTCCAAGGACCTGGTCTGGTCCAAGCTGGTCCATGAATAC CTGATGGGGGCGCACACGCCCATGACGGCGCTGCGGGCCTGGAATGCCGATGCAACGCGCCTGCCCGCCCGCATGCACAG CGAGTACCTGCGCAGCCTGTACCTGCACAACGACCTGGCCGCGGGCCGCTACCGCGCTGCCGGCCAGGTGGTGAGGCTGT CCCACATCGAGCTGCCGCTCTTTGTGGTCGCGACCGAGAGCGACCATGTCTCGCCCTGGCACTCGGTGTACAAGATTCAC CGCCTGACCTCCAGCCCGGTCAGCTTTGTGCTGAGTTCCGGTGGCCACAACGTGGGCATCGTCAATCCACCCGCAGGGCC TGCCGCCCATCCGCAGGCCAGCTACCGCATCGCCTCCCATGCGCCGGGCAAGGCGCCTGCCCATCCCGGGGACTGGCTCG ACACGGCGGCGCGGCGTGAGGGGTCATGGTGGCCGGGCTGGCATGACTGGCTGAACAAGCACTCATCGGGCAAGGTCAAA CCACCCCGCGTCAACGCGGTTATGTTCGAGGGCGCTCCGCTGGCAGCGCCCGGCCGCTACGTGCACCTCGACTGA
Upstream 100 bases:
>100_bases AATACGGTGCAGGTGGAATGATGTGCAATATGTGCAATATGTGCAACATGTGCATGCGGCTGTAGCATGTGGTGACCATC GCCACCGAAAGGGGGTTTTC
Downstream 100 bases:
>100_bases CAGGCGCGACCGCCCGGGAGAGCGGTCGGAGGCCGCGGGGCGGCAGCTTAATGCGTCGTCGGCCGGCTTCCCGCGCCATC CAGGGAGGCGGAAAGACTGG
Product: poly-beta-hydroxybutyrate polymerase-like protein
Products: NA
Alternate protein names: PHA synthase; PHB synthase; Poly(3-hydroxyalkanoate) polymerase; PHA polymerase; Poly(3-hydroxybutyrate) polymerase; PHB polymerase; Polyhydroxyalkanoic acid synthase [H]
Number of amino acids: Translated: 584; Mature: 583
Protein sequence:
>584_residues MALSNPRPEGQHALPPMDVPLKLWLARQAHGISPASLTLAYTDWLSHLLVSPSKQAELGASALRKWLLWLQYAPQPWQQD RPVSVESPSQDKRFSRPEWQAPPFNVLAQAFLQQQQWWAEAMTGVRGVSRHHEEVAAFITRQWLDMLSPSNFIATNPQVL KETLANGGVNLATGLANWSRDAVAVLTDGKPRGVEAFAPGQGVALTPGKVVFRNHLIELIQYEPVTAEVDTEPVLIVPSW IMKYYILDLTPDDSLVKYMVAQGHTVFMISWRNPDSGDRDLGMDDYLELGVMAALQAVRSVRPRARIHAMGYCLGGTLLA IAAAALAGSSPNLLKTVTLLAAQADFHEPGELGLFIDESQIAFVEDLMAEWGYLDERQMAGAFALINSKDLVWSKLVHEY LMGAHTPMTALRAWNADATRLPARMHSEYLRSLYLHNDLAAGRYRAAGQVVRLSHIELPLFVVATESDHVSPWHSVYKIH RLTSSPVSFVLSSGGHNVGIVNPPAGPAAHPQASYRIASHAPGKAPAHPGDWLDTAARREGSWWPGWHDWLNKHSSGKVK PPRVNAVMFEGAPLAAPGRYVHLD
Sequences:
>Translated_584_residues MALSNPRPEGQHALPPMDVPLKLWLARQAHGISPASLTLAYTDWLSHLLVSPSKQAELGASALRKWLLWLQYAPQPWQQD RPVSVESPSQDKRFSRPEWQAPPFNVLAQAFLQQQQWWAEAMTGVRGVSRHHEEVAAFITRQWLDMLSPSNFIATNPQVL KETLANGGVNLATGLANWSRDAVAVLTDGKPRGVEAFAPGQGVALTPGKVVFRNHLIELIQYEPVTAEVDTEPVLIVPSW IMKYYILDLTPDDSLVKYMVAQGHTVFMISWRNPDSGDRDLGMDDYLELGVMAALQAVRSVRPRARIHAMGYCLGGTLLA IAAAALAGSSPNLLKTVTLLAAQADFHEPGELGLFIDESQIAFVEDLMAEWGYLDERQMAGAFALINSKDLVWSKLVHEY LMGAHTPMTALRAWNADATRLPARMHSEYLRSLYLHNDLAAGRYRAAGQVVRLSHIELPLFVVATESDHVSPWHSVYKIH RLTSSPVSFVLSSGGHNVGIVNPPAGPAAHPQASYRIASHAPGKAPAHPGDWLDTAARREGSWWPGWHDWLNKHSSGKVK PPRVNAVMFEGAPLAAPGRYVHLD >Mature_583_residues ALSNPRPEGQHALPPMDVPLKLWLARQAHGISPASLTLAYTDWLSHLLVSPSKQAELGASALRKWLLWLQYAPQPWQQDR PVSVESPSQDKRFSRPEWQAPPFNVLAQAFLQQQQWWAEAMTGVRGVSRHHEEVAAFITRQWLDMLSPSNFIATNPQVLK ETLANGGVNLATGLANWSRDAVAVLTDGKPRGVEAFAPGQGVALTPGKVVFRNHLIELIQYEPVTAEVDTEPVLIVPSWI MKYYILDLTPDDSLVKYMVAQGHTVFMISWRNPDSGDRDLGMDDYLELGVMAALQAVRSVRPRARIHAMGYCLGGTLLAI AAAALAGSSPNLLKTVTLLAAQADFHEPGELGLFIDESQIAFVEDLMAEWGYLDERQMAGAFALINSKDLVWSKLVHEYL MGAHTPMTALRAWNADATRLPARMHSEYLRSLYLHNDLAAGRYRAAGQVVRLSHIELPLFVVATESDHVSPWHSVYKIHR LTSSPVSFVLSSGGHNVGIVNPPAGPAAHPQASYRIASHAPGKAPAHPGDWLDTAARREGSWWPGWHDWLNKHSSGKVKP PRVNAVMFEGAPLAAPGRYVHLD
Specific function: Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation [H]
COG id: COG3243
COG function: function code I; Poly(3-hydroxyalkanoate) synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PHA/PHB synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR010963 - InterPro: IPR010941 [H]
Pfam domain/function: PF00561 Abhydrolase_1; PF07167 PhaC_N [H]
EC number: NA
Molecular weight: Translated: 64418; Mature: 64287
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALSNPRPEGQHALPPMDVPLKLWLARQAHGISPASLTLAYTDWLSHLLVSPSKQAELGA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHEEEHHHHHHHHHHCCCCHHHHHHH SALRKWLLWLQYAPQPWQQDRPVSVESPSQDKRFSRPEWQAPPFNVLAQAFLQQQQWWAE HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH AMTGVRGVSRHHEEVAAFITRQWLDMLSPSNFIATNPQVLKETLANGGVNLATGLANWSR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCCEEHHHHCCCCC DAVAVLTDGKPRGVEAFAPGQGVALTPGKVVFRNHLIELIQYEPVTAEVDTEPVLIVPSW CEEEEEECCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECHH IMKYYILDLTPDDSLVKYMVAQGHTVFMISWRNPDSGDRDLGMDDYLELGVMAALQAVRS HHEEEEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH VRPRARIHAMGYCLGGTLLAIAAAALAGSSPNLLKTVTLLAAQADFHEPGELGLFIDESQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCH IAFVEDLMAEWGYLDERQMAGAFALINSKDLVWSKLVHEYLMGAHTPMTALRAWNADATR HHHHHHHHHHCCCCCHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHH LPARMHSEYLRSLYLHNDLAAGRYRAAGQVVRLSHIELPLFVVATESDHVSPWHSVYKIH CCHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHH RLTSSPVSFVLSSGGHNVGIVNPPAGPAAHPQASYRIASHAPGKAPAHPGDWLDTAARRE HHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCC GSWWPGWHDWLNKHSSGKVKPPRVNAVMFEGAPLAAPGRYVHLD CCCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECC >Mature Secondary Structure ALSNPRPEGQHALPPMDVPLKLWLARQAHGISPASLTLAYTDWLSHLLVSPSKQAELGA CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHEEEHHHHHHHHHHCCCCHHHHHHH SALRKWLLWLQYAPQPWQQDRPVSVESPSQDKRFSRPEWQAPPFNVLAQAFLQQQQWWAE HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH AMTGVRGVSRHHEEVAAFITRQWLDMLSPSNFIATNPQVLKETLANGGVNLATGLANWSR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHCCCCEEHHHHCCCCC DAVAVLTDGKPRGVEAFAPGQGVALTPGKVVFRNHLIELIQYEPVTAEVDTEPVLIVPSW CEEEEEECCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECHH IMKYYILDLTPDDSLVKYMVAQGHTVFMISWRNPDSGDRDLGMDDYLELGVMAALQAVRS HHEEEEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH VRPRARIHAMGYCLGGTLLAIAAAALAGSSPNLLKTVTLLAAQADFHEPGELGLFIDESQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCH IAFVEDLMAEWGYLDERQMAGAFALINSKDLVWSKLVHEYLMGAHTPMTALRAWNADATR HHHHHHHHHHCCCCCHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHH LPARMHSEYLRSLYLHNDLAAGRYRAAGQVVRLSHIELPLFVVATESDHVSPWHSVYKIH CCHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHH RLTSSPVSFVLSSGGHNVGIVNPPAGPAAHPQASYRIASHAPGKAPAHPGDWLDTAARRE HHCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCC GSWWPGWHDWLNKHSSGKVKPPRVNAVMFEGAPLAAPGRYVHLD CCCCCCHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9748438 [H]