Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is murC
Identifier: 91786974
GI number: 91786974
Start: 1108886
End: 1110289
Strand: Direct
Name: murC
Synonym: Bpro_1076
Alternate gene names: 91786974
Gene position: 1108886-1110289 (Clockwise)
Preceding gene: 91786973
Following gene: 91786975
Centisome position: 21.32
GC content: 64.03
Gene sequence:
>1404_bases ATGAAACACGCCATCAAAAACATTCACTTCATCGGGCTGGGCGGCTCCGGCATGTCAGGCATTGCCGAAGTGCTGCACAA CCTGGGTTACGTCATTTCGGGATCTGACCTGTCGGACAGCGCCACATTACAGCGGCTGGCCAGGCTTGGCATCAAGACCT TTGTCGGGCATGCCGCCAGCAACCTGGCCAAGGTCGATGCGGTGGTGACCTCCACCGCGGTGCAGGCCGACAACCCCGAG GTGCTGGCGGCGCGCGAAAAGCGCATTCCCGTGGTGCCCCGTGCCCTGATGCTGGCCGAACTGATGCGCCTGAAGCAGGG CATTGCGATTGCGGGTACCCATGGCAAGACCACGACGACCAGCCTGGTGGCCAGTGTGCTGGCCGAAGCCGGGCTGGATC CGACGTTTGTCATCGGTGGCCGGCTCAACAGCGCGGGTGCCAATGCCAGGCTGGGCCTGGGCGACTACATCGTGGTGGAA GCCGACGAGTCCGATGCATCGTTCCTGAACCTGTTGCCGGTGATGGCGGTCGTGACCAACATCGACGCCGACCACATGGA AACCTATGGCCATGATTTCGCCAATCTGAAGAAGGCCTTCGTCGACTTTTTGCATCGCATGCCTTTTTACGGTACCGCCA TTTTGTGCACCGATGACCCCGCGGTGCGTGAGATCGTCCCGCAGGTTTCCTGCCCGATCACCAGCTACGGTTTCGGTGAG GACGCGCAGGTGCGGGCTGTCAACGTGCGGCCGGTGGGCGCGCAGATGCACTTCACCGCGCAGCGCCGCAATGGCGTCAC CTTGCCGGACCTGGAGGTCGTGCTCAATCTCGCCGGCGAGCACAACGTGCTCAATGCCTTGTCAGCCATTGCGGTGGCGG TGGAGCTCAACGTGCCCGACACGGCAGTGCAAAAAGCGTTGGCCGAATTCAAGGGCGTGGGCCGGCGCTTCCAGAGCTAC GGCGATGTGCCTGCCAAAGGCGGTGGCCATTTCACGGTCATCGAGGACTACGGCCACCATCCGGTCGAGGTGGCTGCCAC GCTGGCCGCTGCGCGCGGTGCCTTCCCGGGCAGGCGGCTGGTGCTGGCGTTCCAGCCGCACCGCTACACCCGGACCCGCG ACTGCTTTGAGGACTTCGTCAAGGTCATCGGCCAGGCCGATGCCGTGCTGCTGGCGGAGGTCTATGCCGCCGGCGAGACA CCCATCGTGGCGGCAGACGGCCGCTCGCTGGCGCGCGCGCTGCGCGTGGCGGGCAAGCTGGAGCCGGTATTTGTGAGCGA GATCGACGCGATGCCGCAAGCCATCCTGGATAACGCACTGGGAGGCGATGTCGTGATGTGCATGGGTGCCGGATCGATTG GGCTCGTGCCCGGCAAATTGTTGGAACTGGAAGGTGCGCAGTGA
Upstream 100 bases:
>100_bases CAGATCGATCCGCGCTGCTTCAATGCGCGCTAAAAGCCAAAACCATGCAAAAAACCGATGCCACAACGCGCGTTGTGGCT GCTTGCGAGGAGCTTGCAAG
Downstream 100 bases:
>100_bases GTAGCAACGCAGACACATCCCAGGCCGTGAGCGCCGGGACAAGCGTGGGGGCCACGTTTGGCAAGGTCGCCGTCCTCATG GGGGGCATGTCGGCCGAGCG
Product: UDP-N-acetylmuramate--L-alanine ligase
Products: NA
Alternate protein names: UDP-N-acetylmuramoyl-L-alanine synthetase
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MKHAIKNIHFIGLGGSGMSGIAEVLHNLGYVISGSDLSDSATLQRLARLGIKTFVGHAASNLAKVDAVVTSTAVQADNPE VLAAREKRIPVVPRALMLAELMRLKQGIAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLNSAGANARLGLGDYIVVE ADESDASFLNLLPVMAVVTNIDADHMETYGHDFANLKKAFVDFLHRMPFYGTAILCTDDPAVREIVPQVSCPITSYGFGE DAQVRAVNVRPVGAQMHFTAQRRNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPDTAVQKALAEFKGVGRRFQSY GDVPAKGGGHFTVIEDYGHHPVEVAATLAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVKVIGQADAVLLAEVYAAGET PIVAADGRSLARALRVAGKLEPVFVSEIDAMPQAILDNALGGDVVMCMGAGSIGLVPGKLLELEGAQ
Sequences:
>Translated_467_residues MKHAIKNIHFIGLGGSGMSGIAEVLHNLGYVISGSDLSDSATLQRLARLGIKTFVGHAASNLAKVDAVVTSTAVQADNPE VLAAREKRIPVVPRALMLAELMRLKQGIAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLNSAGANARLGLGDYIVVE ADESDASFLNLLPVMAVVTNIDADHMETYGHDFANLKKAFVDFLHRMPFYGTAILCTDDPAVREIVPQVSCPITSYGFGE DAQVRAVNVRPVGAQMHFTAQRRNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPDTAVQKALAEFKGVGRRFQSY GDVPAKGGGHFTVIEDYGHHPVEVAATLAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVKVIGQADAVLLAEVYAAGET PIVAADGRSLARALRVAGKLEPVFVSEIDAMPQAILDNALGGDVVMCMGAGSIGLVPGKLLELEGAQ >Mature_467_residues MKHAIKNIHFIGLGGSGMSGIAEVLHNLGYVISGSDLSDSATLQRLARLGIKTFVGHAASNLAKVDAVVTSTAVQADNPE VLAAREKRIPVVPRALMLAELMRLKQGIAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLNSAGANARLGLGDYIVVE ADESDASFLNLLPVMAVVTNIDADHMETYGHDFANLKKAFVDFLHRMPFYGTAILCTDDPAVREIVPQVSCPITSYGFGE DAQVRAVNVRPVGAQMHFTAQRRNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPDTAVQKALAEFKGVGRRFQSY GDVPAKGGGHFTVIEDYGHHPVEVAATLAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVKVIGQADAVLLAEVYAAGET PIVAADGRSLARALRVAGKLEPVFVSEIDAMPQAILDNALGGDVVMCMGAGSIGLVPGKLLELEGAQ
Specific function: Cell wall formation
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family
Homologues:
Organism=Escherichia coli, GI1786279, Length=464, Percent_Identity=51.0775862068966, Blast_Score=438, Evalue=1e-124, Organism=Escherichia coli, GI1790680, Length=478, Percent_Identity=29.4979079497908, Blast_Score=169, Evalue=3e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MURC_POLSJ (Q12EL4)
Other databases:
- EMBL: CP000316 - RefSeq: YP_547926.1 - ProteinModelPortal: Q12EL4 - SMR: Q12EL4 - STRING: Q12EL4 - GeneID: 4012083 - GenomeReviews: CP000316_GR - KEGG: pol:Bpro_1076 - NMPDR: fig|296591.1.peg.3329 - eggNOG: COG0773 - HOGENOM: HBG476594 - OMA: YQPHRYS - PhylomeDB: Q12EL4 - ProtClustDB: PRK00421 - BioCyc: PSP296591:BPRO_1076-MONOMER - GO: GO:0005737 - HAMAP: MF_00046 - InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR016040 - InterPro: IPR005758 - Gene3D: G3DSA:3.90.190.20 - Gene3D: G3DSA:3.40.1190.10 - Gene3D: G3DSA:3.40.50.720 - TIGRFAMs: TIGR01082
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M; SSF53244 Mur_ligase_C; SSF53623 Mur_ligase_cen
EC number: =6.3.2.8
Molecular weight: Translated: 49253; Mature: 49253
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHAIKNIHFIGLGGSGMSGIAEVLHNLGYVISGSDLSDSATLQRLARLGIKTFVGHAAS CCCCCCEEEEEEECCCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH NLAKVDAVVTSTAVQADNPEVLAAREKRIPVVPRALMLAELMRLKQGIAIAGTHGKTTTT HHHHHHHHHHHHEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH SLVASVLAEAGLDPTFVIGGRLNSAGANARLGLGDYIVVEADESDASFLNLLPVMAVVTN HHHHHHHHHCCCCCEEEECCCCCCCCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHC IDADHMETYGHDFANLKKAFVDFLHRMPFYGTAILCTDDPAVREIVPQVSCPITSYGFGE CCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCC DAQVRAVNVRPVGAQMHFTAQRRNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPD CCEEEEEEEEECCCEEEEEEHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHEEEEEECCCH TAVQKALAEFKGVGRRFQSYGDVPAKGGGHFTVIEDYGHHPVEVAATLAAARGAFPGRRL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEE VLAFQPHRYTRTRDCFEDFVKVIGQADAVLLAEVYAAGETPIVAADGRSLARALRVAGKL EEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCC EPVFVSEIDAMPQAILDNALGGDVVMCMGAGSIGLVPGKLLELEGAQ CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCC >Mature Secondary Structure MKHAIKNIHFIGLGGSGMSGIAEVLHNLGYVISGSDLSDSATLQRLARLGIKTFVGHAAS CCCCCCEEEEEEECCCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH NLAKVDAVVTSTAVQADNPEVLAAREKRIPVVPRALMLAELMRLKQGIAIAGTHGKTTTT HHHHHHHHHHHHEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCHHH SLVASVLAEAGLDPTFVIGGRLNSAGANARLGLGDYIVVEADESDASFLNLLPVMAVVTN HHHHHHHHHCCCCCEEEECCCCCCCCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHC IDADHMETYGHDFANLKKAFVDFLHRMPFYGTAILCTDDPAVREIVPQVSCPITSYGFGE CCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCC DAQVRAVNVRPVGAQMHFTAQRRNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPD CCEEEEEEEEECCCEEEEEEHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHEEEEEECCCH TAVQKALAEFKGVGRRFQSYGDVPAKGGGHFTVIEDYGHHPVEVAATLAAARGAFPGRRL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEE VLAFQPHRYTRTRDCFEDFVKVIGQADAVLLAEVYAAGETPIVAADGRSLARALRVAGKL EEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCC EPVFVSEIDAMPQAILDNALGGDVVMCMGAGSIGLVPGKLLELEGAQ CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA