Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is pyrC [H]
Identifier: 91786923
GI number: 91786923
Start: 1050394
End: 1051461
Strand: Direct
Name: pyrC [H]
Synonym: Bpro_1024
Alternate gene names: 91786923
Gene position: 1050394-1051461 (Clockwise)
Preceding gene: 91786922
Following gene: 91786924
Centisome position: 20.2
GC content: 64.98
Gene sequence:
>1068_bases ATGACTTCAGCCATCAGCACCCCGGTTTCCACCCTGACCATCACCCGCCCCGACGACTGGCACCTGCATGTGCGGGACGG CGACGCATTGAGCACGGTGGTGCCGCATACCGCCGCCCAGTTTGGCCGGGCCATCATCATGCCCAACCTGCGCCCGCCGG TGACCACCGCGGCCCAGGCTGTTGCCTACCGCGAGCGCATCCAGGCCGCCGTGCCCGCGGGCGTGGCTTTCGAGCCGCTG ATGACGCTGTATTTGACCGACAACCTGCCGCCCGACGAGATCAAGCGGGCCAAAGAGGCCGGCGTGGTCGCCACCAAGCT CTACCCGGCCGGCGCCACCACCAACAGCGATGCGGGCGTGACCGACCTGCGCAAGACCTACAAGACACTCGAAGCGATGC AGCGCGAAGGCCTGCTGCTGCTGGTGCATGGCGAGGTGACCTCGCCCGACATTGACCTGTTTGACCGCGAGGCGGTGTTC ATCGACACGCAGCTGATTCCACTGCGCCGCGATTTCCCTGAGCTGAAGATCGTGTTTGAGCACATCACCACGAAAGAAGC CGCGCAGTATGTGCATGACGCCGACCGCTTCACGGGCGCCACCATCACCGCGCACCATCTGCTGTACAACCGCAACGCGA TTTTCACCGGCGGCATCCGGCCGCACTACTACTGCCTGCCCGTGCTCAAGCGCGAAACGCATCGCGTCGCGCTGGTCGAG GCGGCCACCAGTGGCAACCACCGGTTTTTCCTCGGCACGGACAGCGCACCGCACCCGGCCCACCTCAAGGAGCATGCCAC CGGCTGCGCCGGCTGCTACACCGCCCATGCGGCGATGGAGCTGTATGCCGAAGCCTTTGATGCGGCGGGCGCACTCGACA AGCTCGAGGCCTTTGCCAGTTTCAACGGCGCGGACTTCTATGGCTTGCCGCGCAACCAGGGCACCATCACCCTGAAAAAG GAAAGCTGGCGGCCCCCCGAGAGTTATGCGTTTGGCGAGGCTGAACTCAAGCCGCTGCGCTCGGGTGAAAGCCTGCCATG GAAGCTTTACTCCACCCGGAGCGAATGA
Upstream 100 bases:
>100_bases ACTTGGCCCGCGGTATTCCCCACGGCAAGTACATGATCAGGATTGGCGCGTATAGCCGGTTTTTCTTCTAGTGGTAGCGA CCGGTGCGACAATTCAAGCC
Downstream 100 bases:
>100_bases TGGACCACAAACCGCGCGTTGCCCTGCTGATTGACGCCGACAATTCACCGGCGTCCAAAATAGACCTGATCCTCAACGAG TTGTCGACCTTTGGCGAGAC
Product: dihydroorotase
Products: NA
Alternate protein names: DHOase [H]
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MTSAISTPVSTLTITRPDDWHLHVRDGDALSTVVPHTAAQFGRAIIMPNLRPPVTTAAQAVAYRERIQAAVPAGVAFEPL MTLYLTDNLPPDEIKRAKEAGVVATKLYPAGATTNSDAGVTDLRKTYKTLEAMQREGLLLLVHGEVTSPDIDLFDREAVF IDTQLIPLRRDFPELKIVFEHITTKEAAQYVHDADRFTGATITAHHLLYNRNAIFTGGIRPHYYCLPVLKRETHRVALVE AATSGNHRFFLGTDSAPHPAHLKEHATGCAGCYTAHAAMELYAEAFDAAGALDKLEAFASFNGADFYGLPRNQGTITLKK ESWRPPESYAFGEAELKPLRSGESLPWKLYSTRSE
Sequences:
>Translated_355_residues MTSAISTPVSTLTITRPDDWHLHVRDGDALSTVVPHTAAQFGRAIIMPNLRPPVTTAAQAVAYRERIQAAVPAGVAFEPL MTLYLTDNLPPDEIKRAKEAGVVATKLYPAGATTNSDAGVTDLRKTYKTLEAMQREGLLLLVHGEVTSPDIDLFDREAVF IDTQLIPLRRDFPELKIVFEHITTKEAAQYVHDADRFTGATITAHHLLYNRNAIFTGGIRPHYYCLPVLKRETHRVALVE AATSGNHRFFLGTDSAPHPAHLKEHATGCAGCYTAHAAMELYAEAFDAAGALDKLEAFASFNGADFYGLPRNQGTITLKK ESWRPPESYAFGEAELKPLRSGESLPWKLYSTRSE >Mature_354_residues TSAISTPVSTLTITRPDDWHLHVRDGDALSTVVPHTAAQFGRAIIMPNLRPPVTTAAQAVAYRERIQAAVPAGVAFEPLM TLYLTDNLPPDEIKRAKEAGVVATKLYPAGATTNSDAGVTDLRKTYKTLEAMQREGLLLLVHGEVTSPDIDLFDREAVFI DTQLIPLRRDFPELKIVFEHITTKEAAQYVHDADRFTGATITAHHLLYNRNAIFTGGIRPHYYCLPVLKRETHRVALVEA ATSGNHRFFLGTDSAPHPAHLKEHATGCAGCYTAHAAMELYAEAFDAAGALDKLEAFASFNGADFYGLPRNQGTITLKKE SWRPPESYAFGEAELKPLRSGESLPWKLYSTRSE
Specific function: Pyrimidine biosynthesis; third step. [C]
COG id: COG0418
COG function: function code F; Dihydroorotase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DHOase family. Type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787301, Length=346, Percent_Identity=54.9132947976879, Blast_Score=383, Evalue=1e-107, Organism=Saccharomyces cerevisiae, GI6323452, Length=356, Percent_Identity=34.8314606741573, Blast_Score=188, Evalue=9e-49,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR004721 - InterPro: IPR002195 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.2.3 [H]
Molecular weight: Translated: 39082; Mature: 38950
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00482 DIHYDROOROTASE_1 ; PS00483 DIHYDROOROTASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSAISTPVSTLTITRPDDWHLHVRDGDALSTVVPHTAAQFGRAIIMPNLRPPVTTAAQA CCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHCCHHHHHHCCEEECCCCCCCHHHHHHH VAYRERIQAAVPAGVAFEPLMTLYLTDNLPPDEIKRAKEAGVVATKLYPAGATTNSDAGV HHHHHHHHHHCCCCCCHHHEEEEEEECCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCH TDLRKTYKTLEAMQREGLLLLVHGEVTSPDIDLFDREAVFIDTQLIPLRRDFPELKIVFE HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHH HITTKEAAQYVHDADRFTGATITAHHLLYNRNAIFTGGIRPHYYCLPVLKRETHRVALVE HHHHHHHHHHHHHHHHHCCCEEEEEHEEEECCEEEECCCCCCEEEEEHHHCCCCEEEEEE AATSGNHRFFLGTDSAPHPAHLKEHATGCAGCYTAHAAMELYAEAFDAAGALDKLEAFAS EECCCCEEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC FNGADFYGLPRNQGTITLKKESWRPPESYAFGEAELKPLRSGESLPWKLYSTRSE CCCCCEECCCCCCCEEEEECCCCCCCHHCCCCCHHCCCCCCCCCCCEEEECCCCC >Mature Secondary Structure TSAISTPVSTLTITRPDDWHLHVRDGDALSTVVPHTAAQFGRAIIMPNLRPPVTTAAQA CCCCCCCCEEEEEECCCCCEEEEECCCCHHHHCCHHHHHHCCEEECCCCCCCHHHHHHH VAYRERIQAAVPAGVAFEPLMTLYLTDNLPPDEIKRAKEAGVVATKLYPAGATTNSDAGV HHHHHHHHHHCCCCCCHHHEEEEEEECCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCH TDLRKTYKTLEAMQREGLLLLVHGEVTSPDIDLFDREAVFIDTQLIPLRRDFPELKIVFE HHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHH HITTKEAAQYVHDADRFTGATITAHHLLYNRNAIFTGGIRPHYYCLPVLKRETHRVALVE HHHHHHHHHHHHHHHHHCCCEEEEEHEEEECCEEEECCCCCCEEEEEHHHCCCCEEEEEE AATSGNHRFFLGTDSAPHPAHLKEHATGCAGCYTAHAAMELYAEAFDAAGALDKLEAFAS EECCCCEEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC FNGADFYGLPRNQGTITLKKESWRPPESYAFGEAELKPLRSGESLPWKLYSTRSE CCCCCEECCCCCCCEEEEECCCCCCCHHCCCCCHHCCCCCCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA