Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91786775
Identifier: 91786775
GI number: 91786775
Start: 896475
End: 897011
Strand: Direct
Name: 91786775
Synonym: Bpro_0873
Alternate gene names: NA
Gene position: 896475-897011 (Clockwise)
Preceding gene: 91786773
Following gene: 91786776
Centisome position: 17.24
GC content: 67.23
Gene sequence:
>537_bases ATGAGCCTGGCAATCCGTGACGAGGTGAAAGCGCTCGCGGCCCTCGCCCTGGCGGTCTGGCTGGCCTGTTGCGGTCCCGC GCGTGCGTCGGCTCCGGCCCAGGCCATGTGGGTGGGCGTGGTGACCTATGTCGTGGATGGCGACACCGTCTGGGTGCGGC CAGCGGATGGCGGCAAGCCCGTCAGCGTTCGAGTGGACGGCATTGACGCCCCCGAAATTTGCCAGCCGGGAGGTGGCATT TCCCGCGATGCGCTCAAGCGGCGGGCCCTGGGCCAGCGCATCGCGGTTTTCGGCAGGCGCCACGACGATTACGGTCGGCT GCTGGCCCGGCTGGAATTGAATGGCGATGACCTGGGCCAATGGATGGTCTCGCAAGGCCAGGCGTGGTCGTATCAGTATG GCCGGCGTGCGGGCCCCTACGCCCTGCAGCAAAGCCGCGCGAAAGCCGCAGGACTTGGTCTTTTCTCGCCGTCTGATGCC ATGCCCCCGGTCTATCCCCGGGCCTTTCGCAAGCAGCATGGACCTTGCCACGCTTGA
Upstream 100 bases:
>100_bases GCACAAGACGCACAGGACGGTCGCGGTGCCTGTAAAAAATCATTAATTTCGGCCGAAAATCCGTCAGGCAAGGAATCGTG CGTTATCAATTTAACAGTCT
Downstream 100 bases:
>100_bases GCCTGTGAACAGTTTCCTGAATTGCGGTGTTTTCTGAAGATGCCAGTCCGGCGCCGGATGAGGGATTTGGATTTGTCCTA CGGCATCTTCGGCCGGCGCC
Product: nuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MSLAIRDEVKALAALALAVWLACCGPARASAPAQAMWVGVVTYVVDGDTVWVRPADGGKPVSVRVDGIDAPEICQPGGGI SRDALKRRALGQRIAVFGRRHDDYGRLLARLELNGDDLGQWMVSQGQAWSYQYGRRAGPYALQQSRAKAAGLGLFSPSDA MPPVYPRAFRKQHGPCHA
Sequences:
>Translated_178_residues MSLAIRDEVKALAALALAVWLACCGPARASAPAQAMWVGVVTYVVDGDTVWVRPADGGKPVSVRVDGIDAPEICQPGGGI SRDALKRRALGQRIAVFGRRHDDYGRLLARLELNGDDLGQWMVSQGQAWSYQYGRRAGPYALQQSRAKAAGLGLFSPSDA MPPVYPRAFRKQHGPCHA >Mature_177_residues SLAIRDEVKALAALALAVWLACCGPARASAPAQAMWVGVVTYVVDGDTVWVRPADGGKPVSVRVDGIDAPEICQPGGGIS RDALKRRALGQRIAVFGRRHDDYGRLLARLELNGDDLGQWMVSQGQAWSYQYGRRAGPYALQQSRAKAAGLGLFSPSDAM PPVYPRAFRKQHGPCHA
Specific function: Unknown
COG id: COG1525
COG function: function code L; Micrococcal nuclease (thermonuclease) homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thermonuclease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016071 - InterPro: IPR006021 - InterPro: IPR002071 [H]
Pfam domain/function: PF00565 SNase [H]
EC number: NA
Molecular weight: Translated: 19140; Mature: 19009
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50830 TNASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLAIRDEVKALAALALAVWLACCGPARASAPAQAMWVGVVTYVVDGDTVWVRPADGGKP CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEECCCEEEEEECCCCCE VSVRVDGIDAPEICQPGGGISRDALKRRALGQRIAVFGRRHDDYGRLLARLELNGDDLGQ EEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHEEEHEECCCCHHHH WMVSQGQAWSYQYGRRAGPYALQQSRAKAAGLGLFSPSDAMPPVYPRAFRKQHGPCHA HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC >Mature Secondary Structure SLAIRDEVKALAALALAVWLACCGPARASAPAQAMWVGVVTYVVDGDTVWVRPADGGKP CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEECCCEEEEEECCCCCE VSVRVDGIDAPEICQPGGGISRDALKRRALGQRIAVFGRRHDDYGRLLARLELNGDDLGQ EEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHEEEHEECCCCHHHH WMVSQGQAWSYQYGRRAGPYALQQSRAKAAGLGLFSPSDAMPPVYPRAFRKQHGPCHA HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9722640; 9628576 [H]