| Definition | Escherichia coli UTI89 chromosome, complete genome. |
|---|---|
| Accession | NC_007946 |
| Length | 5,065,741 |
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The map label for this gene is yrfF [H]
Identifier: 91212870
GI number: 91212870
Start: 3779137
End: 3781272
Strand: Direct
Name: yrfF [H]
Synonym: UTI89_C3896
Alternate gene names: 91212870
Gene position: 3779137-3781272 (Clockwise)
Preceding gene: 91212868
Following gene: 91212871
Centisome position: 74.6
GC content: 52.76
Gene sequence:
>2136_bases ATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAG ACGGCGTCAGCTGCCCTGGACCAACGCCTTCGTGGATGCGCAAACGCGTAAACTCACATCTGAAGAACGTAGCGCCGTTG AAAATTATCTTGAGAGCCTGACGCAGGTATTACAGGTGCCTGGCCCAACGGGAGCCAGCGCGGCACCGATCTCTCTGGCG CTGAATGCCGAAAGCAACAACGTCATGATGCTGACACACGCTATCACGCGTTATGGCATCTCTACCGACGATCCGAATAA ATGGCGTTACTACCTCGATTCGGTAGAAGTCCACCTGCCGCCTTTCTGGGAACAGTACATCAACGATGAGAATACCGTTG AACTGATTCATACCGATTCGCTGCCGCTGGTTATTTCACTCAACGGTCATACGCTGCAGGAGTACATGCAGGAAATTCGC GGCTATGCCTTGCAACCTGTTCCGTCAACGCAGGCGTCGATTCGCGGGGAAGAGAGCGAGCAAATAGAACTGCTCAATAT TCGCAAAGAAACGCACGAAGAGTATGCGCTGAGTCGTCCGCGCGGGCTGCGCGAAGCGTTGCTGATTGTCGCCTCCTTCC TGATGTTCTTTTTCTGCCTGATTACCCCGGATGTCTTTGTTCCGTGGCTGGCAGGCGGCGCGTTACTGCTGCTGGGCGCA GGTCTGTGGGGGCTATTCGCGCCCCCGGCAAAATCCTCCCTGCGGGAAATTCATTGTCTGCGCGGTACACCCCGTCGTTG GGGATTGTTTGGCGAAAACGATCAGGAACAGATCAACAATATTTCACTCGGTATTATCGACCTGGTCTATCCCGCACACT GGCAGCCATACATTGCTCAGGATCTTGGTCAACAAACCGATATCGATATCTATCTCGACCGCCACGTAGTGCGTCAGGGG CGATATCTTTCGCTGCATGATGAAGTAAAAAACTTTCCGTTACAGCACTGGCTGCGCAGTACGATTATTGCTGCGGGCTC GCTATTGGTGCTGTTTATGCTGTTATTCTGGATCCCGCTGGATATGCCGCTGAAATTCACCCTCTCGTGGATGAAAGGCG CGCAGACCATTGAAGCCACCAGCGTGAAACAACTGGCTGACGCTGGCGTGCGGGTTGGCGATACATTGCGTATTAGCGGT ACGGGAATGTGTAATATTCGCACTTCCGGTACCTGGAGCGCGAAAACCAACTCACCTTTTTTACCGTTTGACTGCTCGCA GATCATCTGGAATGACGCCCGCTCATTGCCATTACCAGAATCTGAATTGGTCAACAAAGCGACGGCATTGACCGAAGCAG TTAATCGCCAGCTGCACCCTAAACCGGAAGATGAATCTCGCGTCAGTGCCTCATTACGTTCAGCAATTCAAAAATCCGGT ATGGTATTGCTTGATGATTTTGGCGACATTGTTCTGAAGACAGCAGATCTGTGTTCTGCCAAAGATGACTGTGTGCGACT GAAAAATGCGCTGGTCAATCTCGGCAACAGTAAAGACTGGGACGCGCTGGTAAAACGCGCCAACGCCGGGAAACTCGATG GCGTGAATGTGTTATTACGCCCGGTGAGTGCGGAATCGCTGGATAACCTGGTGGCCACCTCTACCGCGCCGTTTATCACG CATGAAACGGCGCGAGCGGCACAATCACTAAACAGTCCGGCCCCCGGCGGGTTCCTGATTGTCAGCGACGAAGGCAGCGA TTTTGTTGATCAGCCCTGGCCTTCGGCATCACTTTACGACTATCCGCCGCAAGAACAGTGGAACGCTTTCCAGAAACTGG CACAAATGCTGATGCATACGCCGTTTAACGCCGAAGGTATCGTCACAAAAATCTTCACTGACGCCAATGGTACGCAGCAT ATTGGCCTTCATCCGATCCCGGATCGTTCCGGCCTGTGGCGCTATCTCAGCACCACGCTGCTGCTACTGACGATGCTGGG TAGCGCCATTTATAATGGCGTACAGGCCTGGCGTCGTTACCAGCGCCATCGTACTCGCATGATGAAGATTCAGGCCTATT ATGAAAGCTGCCTGAACCCGCAACTGATCACCCCTTCAGAAAGCCTTATCGAATAA
Upstream 100 bases:
>100_bases TCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGA CTAAGTAAGATGGGGAAAGC
Downstream 100 bases:
>100_bases CACGTTTGCGCGGCAGGTTATGCTACCCTGTCGCGCAAATTGCTTCACTCTGGAGATTTCCCTCATGCATATCAACATTG CCTGGCAGGACGTAGATACC
Product: putative IgaA-like membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 711; Mature: 710
Protein sequence:
>711_residues MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFVDAQTRKLTSEERSAVENYLESLTQVLQVPGPTGASAAPISLA LNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQEIR GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGA GLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQDLGQQTDIDIYLDRHVVRQG RYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISG TGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSG MVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFIT HETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQH IGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQRHRTRMMKIQAYYESCLNPQLITPSESLIE
Sequences:
>Translated_711_residues MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFVDAQTRKLTSEERSAVENYLESLTQVLQVPGPTGASAAPISLA LNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQEIR GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGA GLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQDLGQQTDIDIYLDRHVVRQG RYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISG TGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSG MVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFIT HETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQH IGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQRHRTRMMKIQAYYESCLNPQLITPSESLIE >Mature_710_residues STIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFVDAQTRKLTSEERSAVENYLESLTQVLQVPGPTGASAAPISLAL NAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQEIRG YALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGAG LWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQDLGQQTDIDIYLDRHVVRQGR YLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGT GMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSGM VLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITH ETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHI GLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQRHRTRMMKIQAYYESCLNPQLITPSESLIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the igaA family [H]
Homologues:
Organism=Escherichia coli, GI1789801, Length=711, Percent_Identity=99.2967651195499, Blast_Score=1455, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010771 - ProDom: PD147088 [H]
Pfam domain/function: PF07095 IgaA [H]
EC number: NA
Molecular weight: Translated: 79490; Mature: 79359
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFVDAQTRKLTSEERSAVENYLESL CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHH TQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLP HHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEHHHHHCCCCCCCCCCCEEEEECEEEECC PFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQEIRGYALQPVPSTQASIRGEESE CHHHHHCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHCCEECCCCCCHHHCCCCCCC QIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGA CEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHH GLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQ HHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHCCCEEHHEECCCCCCCCHHHH DLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPL HCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC DMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGTGMCNIRTSGTWSAKTNSPF CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCC LPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSG CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC MVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLR CEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEE PVSAESLDNLVATSTAPFITHETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYD CCCHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC YPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTL CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHH LLLTMLGSAIYNGVQAWRRYQRHRTRMMKIQAYYESCLNPQLITPSESLIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHCC >Mature Secondary Structure STIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFVDAQTRKLTSEERSAVENYLESL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHH TQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGISTDDPNKWRYYLDSVEVHLP HHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEHHHHHCCCCCCCCCCCEEEEECEEEECC PFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQEIRGYALQPVPSTQASIRGEESE CHHHHHCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHCCEECCCCCCHHHCCCCCCC QIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFFCLITPDVFVPWLAGGALLLLGA CEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHH GLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQEQINNISLGIIDLVYPAHWQPYIAQ HHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHCCCEEHHEECCCCCCCCHHHH DLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPLQHWLRSTIIAAGSLLVLFMLLFWIPL HCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC DMPLKFTLSWMKGAQTIEATSVKQLADAGVRVGDTLRISGTGMCNIRTSGTWSAKTNSPF CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCC LPFDCSQIIWNDARSLPLPESELVNKATALTEAVNRQLHPKPEDESRVSASLRSAIQKSG CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC MVLLDDFGDIVLKTADLCSAKDDCVRLKNALVNLGNSKDWDALVKRANAGKLDGVNVLLR CEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEE PVSAESLDNLVATSTAPFITHETARAAQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYD CCCHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC YPPQEQWNAFQKLAQMLMHTPFNAEGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTL CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHH LLLTMLGSAIYNGVQAWRRYQRHRTRMMKIQAYYESCLNPQLITPSESLIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]