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The map label for this gene is 89885749

Identifier: 89885749

GI number: 89885749

Start: 18499

End: 18867

Strand: Reverse

Name: 89885749

Synonym: Rfer_4262

Alternate gene names: NA

Gene position: 18867-18499 (Counterclockwise)

Preceding gene: 89885750

Following gene: 89885748

Centisome position: 7.33

GC content: 49.59

Gene sequence:

>369_bases
ATGCATTCTCTCGCAATATCCCACGGCAACGTGTCAGACGACAAGTTGAAACTCCGACTCATGTTGGCCATGTTGTTTGT
CTTTTTGGTATTGACGCTTTTGCCCGATCTTGCGCACGCGCAGAGTGGGCCTCTGCCTTGGGAAACGTTTAGCAATAAAT
TGGCGTGTACATTGTCTGGAAACTGGGTGAAGTGGATGGCAGTGATTGCAATTGCGTTGGGTGGAGTCATGTTCGGTCTT
GGCGAATTGTCGGGGCCATTTCAGAAGATGATGCAGATTGCAGGAGGCTTCAGTATCGCGCTGGGAGCTGTCGGGATTGT
GAATATGTTGCTTAATACCTCAGGCACCAACATAAACCTTTGCCCGTGA

Upstream 100 bases:

>100_bases
CGGCCGGCGCTTTATCACCGAGTTGATTGAGATCGAAGGAATCGATCCCAACACCAACGCCTACGTCATCAAATCAATTT
TTAACCACCAGGAGCATTAA

Downstream 100 bases:

>100_bases
CATCCAAACGATGCGAGCAACGCCCATATATCAATGCCTGCTTGAGGTCAAGTCAGTGGCCGGAGCGGAGTTCCAACCCG
TCGTCATTAACGTGACGATG

Product: conjugal transfer protein TrbC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MHSLAISHGNVSDDKLKLRLMLAMLFVFLVLTLLPDLAHAQSGPLPWETFSNKLACTLSGNWVKWMAVIAIALGGVMFGL
GELSGPFQKMMQIAGGFSIALGAVGIVNMLLNTSGTNINLCP

Sequences:

>Translated_122_residues
MHSLAISHGNVSDDKLKLRLMLAMLFVFLVLTLLPDLAHAQSGPLPWETFSNKLACTLSGNWVKWMAVIAIALGGVMFGL
GELSGPFQKMMQIAGGFSIALGAVGIVNMLLNTSGTNINLCP
>Mature_122_residues
MHSLAISHGNVSDDKLKLRLMLAMLFVFLVLTLLPDLAHAQSGPLPWETFSNKLACTLSGNWVKWMAVIAIALGGVMFGL
GELSGPFQKMMQIAGGFSIALGAVGIVNMLLNTSGTNINLCP

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12971; Mature: 12971

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSLAISHGNVSDDKLKLRLMLAMLFVFLVLTLLPDLAHAQSGPLPWETFSNKLACTLSG
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEECC
NWVKWMAVIAIALGGVMFGLGELSGPFQKMMQIAGGFSIALGAVGIVNMLLNTSGTNINL
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEE
CP
CC
>Mature Secondary Structure
MHSLAISHGNVSDDKLKLRLMLAMLFVFLVLTLLPDLAHAQSGPLPWETFSNKLACTLSG
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEECC
NWVKWMAVIAIALGGVMFGLGELSGPFQKMMQIAGGFSIALGAVGIVNMLLNTSGTNINL
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEE
CP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA