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The map label for this gene is trbB [H]

Identifier: 89885750

GI number: 89885750

Start: 18868

End: 19863

Strand: Reverse

Name: trbB [H]

Synonym: Rfer_4263

Alternate gene names: 89885750

Gene position: 19863-18868 (Counterclockwise)

Preceding gene: 89885751

Following gene: 89885749

Centisome position: 7.72

GC content: 54.32

Gene sequence:

>996_bases
ATGGCAACTGTTCAGATAGATGCAACCGCAAAAAACGCCGAAAAGGCGTTTGACTTGATTCGTGCCCGTCTTTCGCCCCT
CTTTGAACTTTTCCTTCAGGATGGCGTCACGGAGGTGAACTTTAACGGCCCCGATGATGCCTGGGTGACGAGAGTTGGTC
GAAGGGAGCCGGCCAGTGTCAATGGAATCAACGAGGTGACGGCATCGTCTGCGGTGCGTGAACTGGCTTCGAGCATGGGT
CAGGAATCCATTGCATCAACTACGTCTGCCATCGTCGATGCCAAGATGCCAGGATTTCGGTTCTCGGCCATCTTGTCGCC
CATCGCATCCAAGGGCACGGCTCTTTCCATTCGAAAGCACAGTCCCCGGGTGCTGTCGCTACAAGACTACGTTGACCAGA
AAGTCATCAGCCCAGAAATGGCCCGAATTCTTTCTGAAAAAGTCAAGGCGGGCGCCAACATGCTCATTGGAGGTGGCACC
GATTCGGGCAAGACGACCTTTCTGAACGCGCTGAGCCGGGAAATCCCGGAGGGTGATCGTGTGGGAACGATTGAGGACAC
GCGTGAGTTGTCCCTGATCGTCAAAAACTGGTTGCCACTGGAAACGAACGCACAAAAGGGAGTAACGGCCACGCTGTGCC
TCAAGTCATTGATGCGTCACAGTATTGACCGCATCATTTGCGGAGAACTCAGAGATGGCGCTGCTGCGGACTTCATCTCG
TCGGCCAATACGGGCCACCACGGGTGCATGACCACTCTACATTGCAACTCCGCAGGAATGGCACTTGAGCGACTGGAAGA
CCTATGCCTGCAAGGGGATGCCAGTTGGCCGCTTGTTGCGATCAGGCGGAACATCGGACGCACGATCCAATTCGTCGCTC
ACTTCAAGAAAGCCGACGGCCGGCGCTTTATCACCGAGTTGATTGAGATCGAAGGAATCGATCCCAACACCAACGCCTAC
GTCATCAAATCAATTTTTAACCACCAGGAGCATTAA

Upstream 100 bases:

>100_bases
CCATAGCGAACGCTGCAAAGACGGGCTGATTTGGGAAAACCGAGCGTAAAACAGTAGTTTGTTCTTATATTTTCAGCACA
GATTGGGTCAAAATCAGCTT

Downstream 100 bases:

>100_bases
ATGCATTCTCTCGCAATATCCCACGGCAACGTGTCAGACGACAAGTTGAAACTCCGACTCATGTTGGCCATGTTGTTTGT
CTTTTTGGTATTGACGCTTT

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MATVQIDATAKNAEKAFDLIRARLSPLFELFLQDGVTEVNFNGPDDAWVTRVGRREPASVNGINEVTASSAVRELASSMG
QESIASTTSAIVDAKMPGFRFSAILSPIASKGTALSIRKHSPRVLSLQDYVDQKVISPEMARILSEKVKAGANMLIGGGT
DSGKTTFLNALSREIPEGDRVGTIEDTRELSLIVKNWLPLETNAQKGVTATLCLKSLMRHSIDRIICGELRDGAAADFIS
SANTGHHGCMTTLHCNSAGMALERLEDLCLQGDASWPLVAIRRNIGRTIQFVAHFKKADGRRFITELIEIEGIDPNTNAY
VIKSIFNHQEH

Sequences:

>Translated_331_residues
MATVQIDATAKNAEKAFDLIRARLSPLFELFLQDGVTEVNFNGPDDAWVTRVGRREPASVNGINEVTASSAVRELASSMG
QESIASTTSAIVDAKMPGFRFSAILSPIASKGTALSIRKHSPRVLSLQDYVDQKVISPEMARILSEKVKAGANMLIGGGT
DSGKTTFLNALSREIPEGDRVGTIEDTRELSLIVKNWLPLETNAQKGVTATLCLKSLMRHSIDRIICGELRDGAAADFIS
SANTGHHGCMTTLHCNSAGMALERLEDLCLQGDASWPLVAIRRNIGRTIQFVAHFKKADGRRFITELIEIEGIDPNTNAY
VIKSIFNHQEH
>Mature_330_residues
ATVQIDATAKNAEKAFDLIRARLSPLFELFLQDGVTEVNFNGPDDAWVTRVGRREPASVNGINEVTASSAVRELASSMGQ
ESIASTTSAIVDAKMPGFRFSAILSPIASKGTALSIRKHSPRVLSLQDYVDQKVISPEMARILSEKVKAGANMLIGGGTD
SGKTTFLNALSREIPEGDRVGTIEDTRELSLIVKNWLPLETNAQKGVTATLCLKSLMRHSIDRIICGELRDGAAADFISS
ANTGHHGCMTTLHCNSAGMALERLEDLCLQGDASWPLVAIRRNIGRTIQFVAHFKKADGRRFITELIEIEGIDPNTNAYV
IKSIFNHQEH

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 35988; Mature: 35857

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVQIDATAKNAEKAFDLIRARLSPLFELFLQDGVTEVNFNGPDDAWVTRVGRREPASV
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCCCC
NGINEVTASSAVRELASSMGQESIASTTSAIVDAKMPGFRFSAILSPIASKGTALSIRKH
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECC
SPRVLSLQDYVDQKVISPEMARILSEKVKAGANMLIGGGTDSGKTTFLNALSREIPEGDR
CCCEEEHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC
VGTIEDTRELSLIVKNWLPLETNAQKGVTATLCLKSLMRHSIDRIICGELRDGAAADFIS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SANTGHHGCMTTLHCNSAGMALERLEDLCLQGDASWPLVAIRRNIGRTIQFVAHFKKADG
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
RRFITELIEIEGIDPNTNAYVIKSIFNHQEH
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
ATVQIDATAKNAEKAFDLIRARLSPLFELFLQDGVTEVNFNGPDDAWVTRVGRREPASV
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCCCC
NGINEVTASSAVRELASSMGQESIASTTSAIVDAKMPGFRFSAILSPIASKGTALSIRKH
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECC
SPRVLSLQDYVDQKVISPEMARILSEKVKAGANMLIGGGTDSGKTTFLNALSREIPEGDR
CCCEEEHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC
VGTIEDTRELSLIVKNWLPLETNAQKGVTATLCLKSLMRHSIDRIICGELRDGAAADFIS
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SANTGHHGCMTTLHCNSAGMALERLEDLCLQGDASWPLVAIRRNIGRTIQFVAHFKKADG
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
RRFITELIEIEGIDPNTNAYVIKSIFNHQEH
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]