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The map label for this gene is trbI [H]

Identifier: 89885739

GI number: 89885739

Start: 6727

End: 8049

Strand: Reverse

Name: trbI [H]

Synonym: Rfer_4252

Alternate gene names: 89885739

Gene position: 8049-6727 (Counterclockwise)

Preceding gene: 89885740

Following gene: 89885738

Centisome position: 3.13

GC content: 57.07

Gene sequence:

>1323_bases
ATGGAGGTTCCGCCAAAAGGACTGATCCCACGGTCTGGGCTCTTCTTCTTCATTGGAATATTCGTTCTGATGCTGATTGC
CTTTGCTGCGTACGACCTGACAAAATCACGTCCTGCGCCACCTATAGCGAAGGACGCCAACGACAAGGCCGGCACCCCAA
TGACGGCGGTAAACGCCAACCCACCACCACCACCGGGTGACATAGCAGAGATAGCTCGCGCCCAAGGAGCGAAGGCAGAT
CAAGTCGTCGCTGCTGAAGCCCGCATTTCCGCGAATGCAAGCACACAGCCACTCCCCGCTGGCACGGTCACGGGCAATGG
CGCCACTCAATCACGGCGGGGCATGATTCTTCCCAAAGGCATGAGCAACCCTGATGGTACGGCTGGCGCCACTTCGATTG
AGTCGGCCAGCGATCAGCGTGAGGCTGCCGCAGCTGTATCGGGCATCTTCTCCATGACGGGCAGTGGAGAAGGGGTTGCT
GGTGCTTTAGGACGCATGGGTGCGCCAGGCGCAAGTGAGATGGAGACTTCAGCAGATGCTGTGCAACGCCAAATCGATGC
GCTAACAAAGACCCAGAATGGCACAAATCAGGACGCGGGTGCCCCCTTCGATGTTGCAAAGATATTGGCGAGCCTGCAAG
GCGGTCAAAAAGCACCAGTCACAGGCAAAGACCAGGCATGGCTCAAGGAGTCGGCCAGCGAGACGGTGTCCGAGGCCGTC
TACGCCAAAACACCGGCGTCGCCGTGGATGCTGTTTCAAGGTACGCGAGTTCCCATTGTGCTGCGTGAAGAGGTCAATAG
CGATCTCCCCGGCTCTGTGACGGCCATGTCGACATCGCCGGTCTATGACAGCATCAATCAGTGCGCAGTGCTTCTTCCTC
CTGGAACCAAGTTTTATGGAGCCTACAGCGCCGATATTCGCCCTGGACAGTCACGCGTACTGTTCGCATTTCGGCGCATG
ATTTTGCCCGATGGACGCTCCGTAGTCCTCGATGGAGCACAGGCCGTCGACCAGCGCGGCGCCGTAGGCGCTGAAGGTGA
TGTCAACAACCACTTTCTGCAAATGTACGGGTACGGCTTTGCGATAGCACTGCTTTCGAGCGCAGGTGGAAGTGGTGGGG
CGAATGTGACAACTACTGACGTCAGCGGAAAATCCACCACCACAACGATTGCCGGTCAAGTCCTGGCCGACATTGGCGGC
AAGATCATGAGCCGTAACGCCACTATTCCTCCAACCATCAAACTCGATATTGGAAGTCGCATGTTTTTGACCATCGTCCG
AGACATTGCGCTCGCGCCTACATCGAGGAATCATTGCAAATGA

Upstream 100 bases:

>100_bases
GCAGTAAGCGGCTGTTCGGGGGCTATTCGTTTGAAGGTTCGGAAAAATGAGTACCCAGCCATCCCTGCAAACGCCGGATC
AGGTGTTGGAGGCCCCTTTG

Downstream 100 bases:

>100_bases
AAACCAACGCGTCGCGCATGCTTTCCCGCGCTTTACCGCTGCTGTTCTCAGTGGTCGCAGCATTGGCCGCCCACGCTGGA
GATGCTTTCGACTTCGGATA

Product: conjugation TrbI-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MEVPPKGLIPRSGLFFFIGIFVLMLIAFAAYDLTKSRPAPPIAKDANDKAGTPMTAVNANPPPPPGDIAEIARAQGAKAD
QVVAAEARISANASTQPLPAGTVTGNGATQSRRGMILPKGMSNPDGTAGATSIESASDQREAAAAVSGIFSMTGSGEGVA
GALGRMGAPGASEMETSADAVQRQIDALTKTQNGTNQDAGAPFDVAKILASLQGGQKAPVTGKDQAWLKESASETVSEAV
YAKTPASPWMLFQGTRVPIVLREEVNSDLPGSVTAMSTSPVYDSINQCAVLLPPGTKFYGAYSADIRPGQSRVLFAFRRM
ILPDGRSVVLDGAQAVDQRGAVGAEGDVNNHFLQMYGYGFAIALLSSAGGSGGANVTTTDVSGKSTTTTIAGQVLADIGG
KIMSRNATIPPTIKLDIGSRMFLTIVRDIALAPTSRNHCK

Sequences:

>Translated_440_residues
MEVPPKGLIPRSGLFFFIGIFVLMLIAFAAYDLTKSRPAPPIAKDANDKAGTPMTAVNANPPPPPGDIAEIARAQGAKAD
QVVAAEARISANASTQPLPAGTVTGNGATQSRRGMILPKGMSNPDGTAGATSIESASDQREAAAAVSGIFSMTGSGEGVA
GALGRMGAPGASEMETSADAVQRQIDALTKTQNGTNQDAGAPFDVAKILASLQGGQKAPVTGKDQAWLKESASETVSEAV
YAKTPASPWMLFQGTRVPIVLREEVNSDLPGSVTAMSTSPVYDSINQCAVLLPPGTKFYGAYSADIRPGQSRVLFAFRRM
ILPDGRSVVLDGAQAVDQRGAVGAEGDVNNHFLQMYGYGFAIALLSSAGGSGGANVTTTDVSGKSTTTTIAGQVLADIGG
KIMSRNATIPPTIKLDIGSRMFLTIVRDIALAPTSRNHCK
>Mature_440_residues
MEVPPKGLIPRSGLFFFIGIFVLMLIAFAAYDLTKSRPAPPIAKDANDKAGTPMTAVNANPPPPPGDIAEIARAQGAKAD
QVVAAEARISANASTQPLPAGTVTGNGATQSRRGMILPKGMSNPDGTAGATSIESASDQREAAAAVSGIFSMTGSGEGVA
GALGRMGAPGASEMETSADAVQRQIDALTKTQNGTNQDAGAPFDVAKILASLQGGQKAPVTGKDQAWLKESASETVSEAV
YAKTPASPWMLFQGTRVPIVLREEVNSDLPGSVTAMSTSPVYDSINQCAVLLPPGTKFYGAYSADIRPGQSRVLFAFRRM
ILPDGRSVVLDGAQAVDQRGAVGAEGDVNNHFLQMYGYGFAIALLSSAGGSGGANVTTTDVSGKSTTTTIAGQVLADIGG
KIMSRNATIPPTIKLDIGSRMFLTIVRDIALAPTSRNHCK

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 45296; Mature: 45296

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVPPKGLIPRSGLFFFIGIFVLMLIAFAAYDLTKSRPAPPIAKDANDKAGTPMTAVNAN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCC
PPPPPGDIAEIARAQGAKADQVVAAEARISANASTQPLPAGTVTGNGATQSRRGMILPKG
CCCCCCHHHHHHHHCCCCCHHEEEEHHHCCCCCCCCCCCCCEECCCCCCCCCCCEEEECC
MSNPDGTAGATSIESASDQREAAAAVSGIFSMTGSGEGVAGALGRMGAPGASEMETSADA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHH
VQRQIDALTKTQNGTNQDAGAPFDVAKILASLQGGQKAPVTGKDQAWLKESASETVSEAV
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
YAKTPASPWMLFQGTRVPIVLREEVNSDLPGSVTAMSTSPVYDSINQCAVLLPPGTKFYG
HHCCCCCCEEEEECCCCCEEEHHHCCCCCCCCEEEEECCCHHHCCCCCEEEECCCCCEEE
AYSADIRPGQSRVLFAFRRMILPDGRSVVLDGAQAVDQRGAVGAEGDVNNHFLQMYGYGF
EEECCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHH
AIALLSSAGGSGGANVTTTDVSGKSTTTTIAGQVLADIGGKIMSRNATIPPTIKLDIGSR
HHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECCCH
MFLTIVRDIALAPTSRNHCK
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEVPPKGLIPRSGLFFFIGIFVLMLIAFAAYDLTKSRPAPPIAKDANDKAGTPMTAVNAN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCC
PPPPPGDIAEIARAQGAKADQVVAAEARISANASTQPLPAGTVTGNGATQSRRGMILPKG
CCCCCCHHHHHHHHCCCCCHHEEEEHHHCCCCCCCCCCCCCEECCCCCCCCCCCEEEECC
MSNPDGTAGATSIESASDQREAAAAVSGIFSMTGSGEGVAGALGRMGAPGASEMETSADA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHH
VQRQIDALTKTQNGTNQDAGAPFDVAKILASLQGGQKAPVTGKDQAWLKESASETVSEAV
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
YAKTPASPWMLFQGTRVPIVLREEVNSDLPGSVTAMSTSPVYDSINQCAVLLPPGTKFYG
HHCCCCCCEEEEECCCCCEEEHHHCCCCCCCCEEEEECCCHHHCCCCCEEEECCCCCEEE
AYSADIRPGQSRVLFAFRRMILPDGRSVVLDGAQAVDQRGAVGAEGDVNNHFLQMYGYGF
EEECCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHH
AIALLSSAGGSGGANVTTTDVSGKSTTTTIAGQVLADIGGKIMSRNATIPPTIKLDIGSR
HHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECCCH
MFLTIVRDIALAPTSRNHCK
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]