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The map label for this gene is yabJ [H]

Identifier: 89256787

GI number: 89256787

Start: 1428815

End: 1429195

Strand: Reverse

Name: yabJ [H]

Synonym: FTL_1498

Alternate gene names: 89256787

Gene position: 1429195-1428815 (Counterclockwise)

Preceding gene: 89256788

Following gene: 89256786

Centisome position: 75.38

GC content: 34.65

Gene sequence:

>381_bases
ATGGAAAAGATTAAAATAAATACTACTAATGCACCACAAGCTATAGGTTCGTATGAGCAAGCTATAAAAGTAGGAAACTT
TGTATATACTTCAGGGCAAATAGGTCTTAGAGCTGATGGAACAATGTCAGGAGAGTGCATTAAAGAGCAAACGACTCAAG
TTATGCAAAATCTAAAGGCAGTTTTAGAAGCAGCAGGCTCTAGTCTAGATAAAGTAGTAAAAGCTACTATTTTTATCAAA
GATATGACAGAATTTAAGCTTATTGATGAAGTTTATGGCTCTTTCTTTAATGGTAATTTCCCAGCTCGTTCATGTGTAGA
GGTAGCTAGATTACCAAGAGATGTTAAGGTTGAAATAGAAGCAGTTGCAATTACTAACTAG

Upstream 100 bases:

>100_bases
AACATCTAAGTGAAGATTGTCGTAAAATACTTAAAAATGCAGGTCCATACTGTATTTTTGAAGAAATAGATCCAACTTAT
AAACTCGTGAGGGATGTCTA

Downstream 100 bases:

>100_bases
AAAATTACTTGGTTTTATTTTCAAAAAGTCAAATTAATTCAATCTAATATATTTTCTCTAAATCATATCCAAAGAGTTTA
CTTAGAATACTAATATAAGC

Product: translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MEKIKINTTNAPQAIGSYEQAIKVGNFVYTSGQIGLRADGTMSGECIKEQTTQVMQNLKAVLEAAGSSLDKVVKATIFIK
DMTEFKLIDEVYGSFFNGNFPARSCVEVARLPRDVKVEIEAVAITN

Sequences:

>Translated_126_residues
MEKIKINTTNAPQAIGSYEQAIKVGNFVYTSGQIGLRADGTMSGECIKEQTTQVMQNLKAVLEAAGSSLDKVVKATIFIK
DMTEFKLIDEVYGSFFNGNFPARSCVEVARLPRDVKVEIEAVAITN
>Mature_126_residues
MEKIKINTTNAPQAIGSYEQAIKVGNFVYTSGQIGLRADGTMSGECIKEQTTQVMQNLKAVLEAAGSSLDKVVKATIFIK
DMTEFKLIDEVYGSFFNGNFPARSCVEVARLPRDVKVEIEAVAITN

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=120, Percent_Identity=41.6666666666667, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI87082396, Length=122, Percent_Identity=47.5409836065574, Blast_Score=120, Evalue=3e-29,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=44.8818897637795, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1787245, Length=97, Percent_Identity=32.9896907216495, Blast_Score=65, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=119, Percent_Identity=45.3781512605042, Blast_Score=112, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=119, Percent_Identity=45.3781512605042, Blast_Score=112, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=119, Percent_Identity=45.3781512605042, Blast_Score=112, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=44.5378151260504, Blast_Score=108, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=47.0588235294118, Blast_Score=100, Evalue=7e-23,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=45.4545454545455, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13753; Mature: 13753

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIKINTTNAPQAIGSYEQAIKVGNFVYTSGQIGLRADGTMSGECIKEQTTQVMQNLKA
CCEEEECCCCCCHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHH
VLEAAGSSLDKVVKATIFIKDMTEFKLIDEVYGSFFNGNFPARSCVEVARLPRDVKVEIE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEE
AVAITN
EEEECC
>Mature Secondary Structure
MEKIKINTTNAPQAIGSYEQAIKVGNFVYTSGQIGLRADGTMSGECIKEQTTQVMQNLKA
CCEEEECCCCCCHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHH
VLEAAGSSLDKVVKATIFIKDMTEFKLIDEVYGSFFNGNFPARSCVEVARLPRDVKVEIE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEE
AVAITN
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]