Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
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Accession | NC_007880 |
Length | 1,895,994 |
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The map label for this gene is 89256643
Identifier: 89256643
GI number: 89256643
Start: 1276096
End: 1276803
Strand: Reverse
Name: 89256643
Synonym: FTL_1340
Alternate gene names: NA
Gene position: 1276803-1276096 (Counterclockwise)
Preceding gene: 89256644
Following gene: 89256642
Centisome position: 67.34
GC content: 31.21
Gene sequence:
>708_bases ATGATTCATTTACACCAATTGCCGAAGTTAAAAGGCAGAAATTATAGCTGTAGTCCTTTTTGCTTAAAACTTGAACTATA TTTAAAAGTTACAAATTTAAATTATCAAAATCACTTTAATCTTGAGTTTAACAAGTCACCAACAAGTAAAATGCCCTATA TAGAAACCATGGGTAAGAAATTTGCTGATAGTAATCTCATTATCGAAATGTTAGATAAGCAAAATCATAATAATCTGGAT GAGCACCTAAATTCTGAGCAAAAAGCTATATCTACAGCATTTATAAGGTTATGTGATGATAGCTTGTATTGGGTTGGGGT ATATAGTCGTTGGGCTGATAAAGATAATTATACATGGAAGCAGGAGTTTCTAGAATCCACTAAATTACCAAAGGCTATGG CGAGTATAGTTTATCCTGTTGCTAAGAGAAATATTCTACGTCAACTAAAGGCTGCTGGTGTTACAAACCTAACTAATAAT GAAATTTATTCAAAAGCTGAGCGTGATTTACAGGATATAGCAGATTATTTGGGTGAAAAAGAGTATTTCTTCAATTCTAA ACTATCATTAGTAGACTTGGTAGTGTTTAGCTTTCTAATTAATATTGCTGACGGCAGTTGTGGACGAAGATTGCAGAACT TTTTGGTTAGTCTTAAACTTGATAATTTTATTAAAAATATGCAAGAATCATTTGAGCTTAATTTTTAA
Upstream 100 bases:
>100_bases ATATTATCAATGAAAGTATCATATCTGAACAAGCTACTAATACTTCTTCATGTAAGTCAGCACATAATATTATAAATTTT GATGAGTAAGGAAAATTATA
Downstream 100 bases:
>100_bases TTTACGCGACTACTTTTCTACTAAGAAAGTAGTACTTTAAAGAGTAATAATTTAACACGATTTGCTGTTTGACTAGTTCA AATAGCTTTAAAACAGCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MIHLHQLPKLKGRNYSCSPFCLKLELYLKVTNLNYQNHFNLEFNKSPTSKMPYIETMGKKFADSNLIIEMLDKQNHNNLD EHLNSEQKAISTAFIRLCDDSLYWVGVYSRWADKDNYTWKQEFLESTKLPKAMASIVYPVAKRNILRQLKAAGVTNLTNN EIYSKAERDLQDIADYLGEKEYFFNSKLSLVDLVVFSFLINIADGSCGRRLQNFLVSLKLDNFIKNMQESFELNF
Sequences:
>Translated_235_residues MIHLHQLPKLKGRNYSCSPFCLKLELYLKVTNLNYQNHFNLEFNKSPTSKMPYIETMGKKFADSNLIIEMLDKQNHNNLD EHLNSEQKAISTAFIRLCDDSLYWVGVYSRWADKDNYTWKQEFLESTKLPKAMASIVYPVAKRNILRQLKAAGVTNLTNN EIYSKAERDLQDIADYLGEKEYFFNSKLSLVDLVVFSFLINIADGSCGRRLQNFLVSLKLDNFIKNMQESFELNF >Mature_235_residues MIHLHQLPKLKGRNYSCSPFCLKLELYLKVTNLNYQNHFNLEFNKSPTSKMPYIETMGKKFADSNLIIEMLDKQNHNNLD EHLNSEQKAISTAFIRLCDDSLYWVGVYSRWADKDNYTWKQEFLESTKLPKAMASIVYPVAKRNILRQLKAAGVTNLTNN EIYSKAERDLQDIADYLGEKEYFFNSKLSLVDLVVFSFLINIADGSCGRRLQNFLVSLKLDNFIKNMQESFELNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI24308336, Length=199, Percent_Identity=33.1658291457286, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI17537617, Length=207, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17537211, Length=207, Percent_Identity=30.4347826086957, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71987414, Length=204, Percent_Identity=27.4509803921569, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25149474, Length=198, Percent_Identity=23.7373737373737, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558902, Length=199, Percent_Identity=25.1256281407035, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17562064, Length=207, Percent_Identity=27.0531400966184, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71997622, Length=200, Percent_Identity=25, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI62472216, Length=189, Percent_Identity=29.6296296296296, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI28574889, Length=192, Percent_Identity=29.1666666666667, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI62472205, Length=160, Percent_Identity=28.125, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574891, Length=163, Percent_Identity=27.6073619631902, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27408; Mature: 27408
Theoretical pI: Translated: 8.29; Mature: 8.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHLHQLPKLKGRNYSCSPFCLKLELYLKVTNLNYQNHFNLEFNKSPTSKMPYIETMGKK CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHH FADSNLIIEMLDKQNHNNLDEHLNSEQKAISTAFIRLCDDSLYWVGVYSRWADKDNYTWK HCCCHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCCHHH QEFLESTKLPKAMASIVYPVAKRNILRQLKAAGVTNLTNNEIYSKAERDLQDIADYLGEK HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC EYFFNSKLSLVDLVVFSFLINIADGSCGRRLQNFLVSLKLDNFIKNMQESFELNF HHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MIHLHQLPKLKGRNYSCSPFCLKLELYLKVTNLNYQNHFNLEFNKSPTSKMPYIETMGKK CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHH FADSNLIIEMLDKQNHNNLDEHLNSEQKAISTAFIRLCDDSLYWVGVYSRWADKDNYTWK HCCCHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCCHHH QEFLESTKLPKAMASIVYPVAKRNILRQLKAAGVTNLTNNEIYSKAERDLQDIADYLGEK HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC EYFFNSKLSLVDLVVFSFLINIADGSCGRRLQNFLVSLKLDNFIKNMQESFELNF HHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA