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The map label for this gene is yrbD [C]

Identifier: 89255922

GI number: 89255922

Start: 497365

End: 497898

Strand: Reverse

Name: yrbD [C]

Synonym: FTL_0515

Alternate gene names: 89255922

Gene position: 497898-497365 (Counterclockwise)

Preceding gene: 89255923

Following gene: 89255921

Centisome position: 26.26

GC content: 33.15

Gene sequence:

>534_bases
ATGAGGAACAAATATTTTGAGACCTCAGTAGGAATTTTTATAATAATAGGTGTGCTATGCTTGTTATTTTTAACATTTAA
AGTCAGTGGCACATCATTTAAAGCATTTAATACACAAGAGTATACTATTACTGCTGATTTTAAAAATGTAGGTTCATTGC
GTACAAATGCGTCTGTTAAAATAGCCGGTGTAGAAATTGGTAGAGTAACTAAAATCGCACTTGAAAAAAGCTATAATGGA
TTTATGGCTGTTGTCACTATGGCGATAAATAGTGATAAAAAAATTCCTGCTAATTACTCTGCCTCAATTGCTATGTCAGG
AATCTTGGGTGATAACTATGTTGCCTTAAGTCCTCCTAGTGAGGATATAATGGCTATCGCTGGTATAGCTGATGCTAATA
ACTCCTCAGAACAAGATAAATATCTACATCAAGGAAGTGTAATACAATTAGAAAATACTCAATCTGCGATAGATTTAGGA
TCACTAATAAACACTTTTGTTGCAGGCAAAGATGATGATAAAAGCAAGGAATAA

Upstream 100 bases:

>100_bases
ATGGCATAGCCAAAGCTACTACAAAAACAGTTGTTTATTGCTGTATGAGTATTTTAGGTGCAGATCTTATTTTAACATCG
ATTATGTTTGGAGGAGTTTG

Downstream 100 bases:

>100_bases
TAATTGCTGCTTTTAAATATATTTTTTTTGTATTAAAATCTAGGGTCATAGATTAACTTTAAGAGCTTTTGATTATGCTA
CGTAAAATTTCGATTTTTTT

Product: ABC transporter, periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MRNKYFETSVGIFIIIGVLCLLFLTFKVSGTSFKAFNTQEYTITADFKNVGSLRTNASVKIAGVEIGRVTKIALEKSYNG
FMAVVTMAINSDKKIPANYSASIAMSGILGDNYVALSPPSEDIMAIAGIADANNSSEQDKYLHQGSVIQLENTQSAIDLG
SLINTFVAGKDDDKSKE

Sequences:

>Translated_177_residues
MRNKYFETSVGIFIIIGVLCLLFLTFKVSGTSFKAFNTQEYTITADFKNVGSLRTNASVKIAGVEIGRVTKIALEKSYNG
FMAVVTMAINSDKKIPANYSASIAMSGILGDNYVALSPPSEDIMAIAGIADANNSSEQDKYLHQGSVIQLENTQSAIDLG
SLINTFVAGKDDDKSKE
>Mature_177_residues
MRNKYFETSVGIFIIIGVLCLLFLTFKVSGTSFKAFNTQEYTITADFKNVGSLRTNASVKIAGVEIGRVTKIALEKSYNG
FMAVVTMAINSDKKIPANYSASIAMSGILGDNYVALSPPSEDIMAIAGIADANNSSEQDKYLHQGSVIQLENTQSAIDLG
SLINTFVAGKDDDKSKE

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=178, Percent_Identity=34.8314606741573, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 19052; Mature: 19052

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKYFETSVGIFIIIGVLCLLFLTFKVSGTSFKAFNTQEYTITADFKNVGSLRTNASVK
CCCCEECHHCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCCEEE
IAGVEIGRVTKIALEKSYNGFMAVVTMAINSDKKIPANYSASIAMSGILGDNYVALSPPS
EEEEEECCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCC
EDIMAIAGIADANNSSEQDKYLHQGSVIQLENTQSAIDLGSLINTFVAGKDDDKSKE
CCEEEEEEECCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRNKYFETSVGIFIIIGVLCLLFLTFKVSGTSFKAFNTQEYTITADFKNVGSLRTNASVK
CCCCEECHHCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCCEEE
IAGVEIGRVTKIALEKSYNGFMAVVTMAINSDKKIPANYSASIAMSGILGDNYVALSPPS
EEEEEECCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCC
EDIMAIAGIADANNSSEQDKYLHQGSVIQLENTQSAIDLGSLINTFVAGKDDDKSKE
CCEEEEEEECCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]