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The map label for this gene is psd

Identifier: 89255860

GI number: 89255860

Start: 425333

End: 426184

Strand: Reverse

Name: psd

Synonym: FTL_0450

Alternate gene names: 89255860

Gene position: 426184-425333 (Counterclockwise)

Preceding gene: 89255866

Following gene: 89255858

Centisome position: 22.48

GC content: 28.64

Gene sequence:

>852_bases
ATGAGAGATAATTTATTTATATATTTACAATATCTACTTCCTCACACTTTAACATCACGTTTAGTTAGTAAACTTGCTGA
CTCAGAAAATAAAATTATTAAAAACCATCTAATAAAACTTGCTATTAAGAAATTCAATATTAATTTAGTTGAAGCTAAAG
AAACCGATATAAGCAAATACAAATCTTTTAATGATTTTTTCATAAGAGAACTTAAAGATGATTTAAGACCCATTTCTAAT
GATAAAAATGTTATCTCCTCTCCTGCAGATGGTGTATTAAGTCAATTCGGCACGATAACTGATAATAGTCTAATTCAAGC
CAAAGGTAAACTCTTTTCTCTAGAATCATTAATTGCTAGTAGTTCAACAACTAGCTTCACAAAATTTGCAACTATATATC
TTTCACCAAAAGATTATCATAGAGTACATATGCCTATAGATGGAAAGCTTACAAAGATGGTTTATATTCCAGGCAAACTT
TTCTCGGTTAATAAAATAACGACCAGTAAAGTTGATAATCTCTTTGCAAAAAATGAACGTCTAATCTGCTACTTTGATAC
AATAATTGGAGAAATTGCAGTAATTTTTGTCGGTGCTCTTTTAGTTGCAGGTATAGAAACAGTATGGCATGGTAAAATTG
CTCCGAACTACTACAAAGACATACAAACTTGGGACTATAATTCTGCTAAATTTAATATCAAATTCAATAAAGGCGATATA
CTTGGATGGTTTAACTTCGGCTCAACAGTAATTATTTTAACTTCTGGAAATAATGTCAGTTTCAAATTTGAAGAGAATAA
AAATAATATTAAAATACAAGTAAATCAAGATTTAGCTTTGATTACAGAATAA

Upstream 100 bases:

>100_bases
ATTTTTTAGAACATAAATAACTAATTAAATTGACTTATCATTATAGCACAGTGTTATACTAATATAATAAAAGCTTTAAA
TAATAAAATAGGTAGAATTA

Downstream 100 bases:

>100_bases
AGATTCATATTTATCCAGCAGCGACTAAAAACATTTCTTTTATTGATTTTATTCAACTTACATTGATTGACATATGCTAT
CTCTCTTTTTTGTTCAAGAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MRDNLFIYLQYLLPHTLTSRLVSKLADSENKIIKNHLIKLAIKKFNINLVEAKETDISKYKSFNDFFIRELKDDLRPISN
DKNVISSPADGVLSQFGTITDNSLIQAKGKLFSLESLIASSSTTSFTKFATIYLSPKDYHRVHMPIDGKLTKMVYIPGKL
FSVNKITTSKVDNLFAKNERLICYFDTIIGEIAVIFVGALLVAGIETVWHGKIAPNYYKDIQTWDYNSAKFNIKFNKGDI
LGWFNFGSTVIILTSGNNVSFKFEENKNNIKIQVNQDLALITE

Sequences:

>Translated_283_residues
MRDNLFIYLQYLLPHTLTSRLVSKLADSENKIIKNHLIKLAIKKFNINLVEAKETDISKYKSFNDFFIRELKDDLRPISN
DKNVISSPADGVLSQFGTITDNSLIQAKGKLFSLESLIASSSTTSFTKFATIYLSPKDYHRVHMPIDGKLTKMVYIPGKL
FSVNKITTSKVDNLFAKNERLICYFDTIIGEIAVIFVGALLVAGIETVWHGKIAPNYYKDIQTWDYNSAKFNIKFNKGDI
LGWFNFGSTVIILTSGNNVSFKFEENKNNIKIQVNQDLALITE
>Mature_283_residues
MRDNLFIYLQYLLPHTLTSRLVSKLADSENKIIKNHLIKLAIKKFNINLVEAKETDISKYKSFNDFFIRELKDDLRPISN
DKNVISSPADGVLSQFGTITDNSLIQAKGKLFSLESLIASSSTTSFTKFATIYLSPKDYHRVHMPIDGKLTKMVYIPGKL
FSVNKITTSKVDNLFAKNERLICYFDTIIGEIAVIFVGALLVAGIETVWHGKIAPNYYKDIQTWDYNSAKFNIKFNKGDI
LGWFNFGSTVIILTSGNNVSFKFEENKNNIKIQVNQDLALITE

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=299, Percent_Identity=27.7591973244147, Blast_Score=115, Evalue=4e-26,
Organism=Escherichia coli, GI1790604, Length=289, Percent_Identity=41.522491349481, Blast_Score=233, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI71980843, Length=259, Percent_Identity=27.027027027027, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI71980840, Length=259, Percent_Identity=27.027027027027, Blast_Score=97, Evalue=8e-21,
Organism=Saccharomyces cerevisiae, GI6321609, Length=231, Percent_Identity=31.6017316017316, Blast_Score=106, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6324160, Length=163, Percent_Identity=30.6748466257669, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649526, Length=271, Percent_Identity=29.1512915129151, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24649528, Length=271, Percent_Identity=29.1512915129151, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24649524, Length=271, Percent_Identity=29.1512915129151, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_FRAT1 (Q14J65)

Other databases:

- EMBL:   AM286280
- RefSeq:   YP_666561.1
- STRING:   Q14J65
- GeneID:   4199946
- GenomeReviews:   AM286280_GR
- KEGG:   ftf:FTF0384c
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   Q14J65
- ProtClustDB:   PRK00044
- BioCyc:   FTUL393115:FTF0384C-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 32127; Mature: 32127

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDNLFIYLQYLLPHTLTSRLVSKLADSENKIIKNHLIKLAIKKFNINLVEAKETDISKY
CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEHCCEEEEECCCCCHHHH
KSFNDFFIRELKDDLRPISNDKNVISSPADGVLSQFGTITDNSLIQAKGKLFSLESLIAS
HCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCEEEHHHHHHC
SSTTSFTKFATIYLSPKDYHRVHMPIDGKLTKMVYIPGKLFSVNKITTSKVDNLFAKNER
CCCCCEEEEEEEEECCCCCCEEECCCCCCEEEEEEECCCEEEECCCHHHHHHHHHHCCCC
LICYFDTIIGEIAVIFVGALLVAGIETVWHGKIAPNYYKDIQTWDYNSAKFNIKFNKGDI
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCE
LGWFNFGSTVIILTSGNNVSFKFEENKNNIKIQVNQDLALITE
EEEEECCCEEEEEECCCEEEEEEECCCCEEEEEECCCEEEEEC
>Mature Secondary Structure
MRDNLFIYLQYLLPHTLTSRLVSKLADSENKIIKNHLIKLAIKKFNINLVEAKETDISKY
CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEHCCEEEEECCCCCHHHH
KSFNDFFIRELKDDLRPISNDKNVISSPADGVLSQFGTITDNSLIQAKGKLFSLESLIAS
HCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCEEEHHHHHHC
SSTTSFTKFATIYLSPKDYHRVHMPIDGKLTKMVYIPGKLFSVNKITTSKVDNLFAKNER
CCCCCEEEEEEEEECCCCCCEEECCCCCCEEEEEEECCCEEEECCCHHHHHHHHHHCCCC
LICYFDTIIGEIAVIFVGALLVAGIETVWHGKIAPNYYKDIQTWDYNSAKFNIKFNKGDI
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCE
LGWFNFGSTVIILTSGNNVSFKFEENKNNIKIQVNQDLALITE
EEEEECCCEEEEEECCCEEEEEEECCCCEEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA